R90422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90422

Determination of introduced cDNA(s)

  • J013030E23 - Rice Full-length cDNAs - Original: J013030E23

    full reading [+] show sequence

    Nucleotide sequence: J013030E23 - full reading 
    GAGTGTGAAA AAATGGCGAC CAAAGTGCAC GCCCGCCGCC TCTAGCGCCG 
    ACCGCCTCCC GTTCCCCTTC CCCACTCCGT CCCGGCAGCT ACCTCCGCTT 
    TCCACCACGC CGGCCGATCC GCCTCCCCAA CCCTATCGCC GGCAGGCGCG 
    CCACGCCAGG TTCCGGGCTC GGAGACACCG CACGCTCCGC CCGATGGGCA 
    CCCCCGGGCC GGAGCTCGCC GCTCTCGCGA TTCGCCGCAG CGGCGGCCGC 
    CTGTTCGAGC GGTAGGGAGG GACTCGTCTC CCCGCCTCTC CTTGTCGTGG 
    ACTCGTGGTA GCGGGGGTGG GAGGAGCCAG AGAGGCTGGG GGCAGGGAGG 
    GAGGATGCTG GGGTCGGGCC TGAATCTCGT CAGCGCGGCG CTCGGCTTCG 
    GCATGACCGC CGCCTTTGTC GCGTTCGTCT GCGCGCGGTT CGTCTGCTGC 
    CGCGCCCGCC GCGCGGACGC TAGCGCGTCA CGGCCACACC CCTCGCCGGT 
    GGACTTCGAC GCGGACTTCC CCTCGGATTT CGATCGCCCG ATAGAGCATT 
    CCCGCAGTGG GTTGGAACCA TTGGCTGTTG CTGCAATTCC TACAATGAAG 
    TATAACTGTG AAGCTTTCCA TTCGGAAGAT GACACCCAGT GCTCCATATG 
    TTTAAGTGAA TACAAGGAGA AGGACATTCT AAGAATTGTA CCTATTTGTC 
    ATCATAACTT TCACCTTTAC TGCTTAGATG CATGGTTGCT GAAGCAGACT 
    ACTTGCCCAA TATGCCGGAT CTCATTGAAA GAACTGCCTG ATGGAAAATC 
    GACCGTATCC TCTGCTCCTA CCATGTCTCA ACCCCCCACC CTCCCTGAGA 
    GTTCTGTTAA TCCAACATCT CATTTCCTCC CAGTTCATCA AGAACACAGA 
    AGCCACCAGG ATGGCCCAGA TATGCCAGAA TCTGTAGAGG TGGTTATTGA 
    AATCCGACAG TGACTACGGC GGAATAGTGC AAGACAAGAA TTTGCAGTTT 
    AAATTCTTTG TACGCCCTTC ATTGCATTGT TTGTCGCAGT TTCAAAATGT 
    TTGAAGTCAA AATTATATGT GGTCCCTTTG CAAGTTGTAG ACTAGAGAAG 
    TCAGTCATAC AATCCACATT ATCATATGTT CTTTTTAATA TATGTTGTAT 
    ATTGCAAGCT AAGTAAAAAT ACCGATAAGA TCTACTGATA TAGGAGTAGA 
    GCTTATTTAC TGTTGAGTCC CTAATTTTTT TATGAGTGAA TTTCAGCAGG 
    GACACCTCTT ACC

    Gene models with high sequence identity

    1. AT4G33565.1 [+] show detail - RING/U-box superfamily protein
      E-value: 4e-18; Score: 89.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 2.7e-07
    superfamily RING/U-box 1.2e-16
    Gene3D no description 2.3e-14
    ProfileScan Zinc finger, RING-type 12.194
    HMMPanther RING FINGER PROTEIN 38 2.6e-17
    HMMPanther RING FINGER PROTEIN 6/12/38 2.6e-17
    HMMSmart Zinc finger, RING-type 3.6e-06

    See the detailed result >

    AT4G33565.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 9700 Blast hits to 9677 proteins in 303 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 776; Plants - 5096; Viruses - 103; Other Eukaryotes - 1362 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR