K42750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42750

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42750

Determination of introduced cDNA(s)

  • J013052J02 - Rice Full-length cDNAs - Original: J013052J02

    full reading [+] show sequence

    Nucleotide sequence: J013052J02 - full reading 
    GGAGCCCGAT TGGCAGTTTG GCACCAGCAC CAGCAGCAGG AGCAGAGACA 
    GGTGAGAGGA GGAGGATAAA CGGAGGAGGC CGCGATGGGA ACCGTGCTGG 
    ACTCCCACTT CCTGGCGCTC ACGGCCATCG TCACTGTGGG ATATCAGCTG 
    GTGTTCTTCA TCATCACCGC GCTCCTGCGG TTCGATAAAG TCACTGATTT 
    CGCAGGAAGT ACGAATTTCA TCATACTTGC AATCCTCACG CTAGCTTTGA 
    AGGGAGCATG GCATTTCCGT CAGGTTGTAT TGACTGTGCT CGTTGTGATT 
    TGGGGTCTTC GCTTAGGACT ATTCTTATTA ATGAGGATTC TTCAATGGGG 
    AGAGGACAAA CGGTTTGATG AAATGCGCGA TAACTTGGGA AAACTAGCAG 
    TTTTCTGGAT TTTCCAGGCT GTTTGGGTAT GGACTGTCAG CTTGCCTGTT 
    ACAATTGTGA ACGCAAGTGA CAGCGATCCC TCAATTGAAG CCCGTGATAT 
    TATTGGTTGG ATCATGTGGC TGATCGGGGC AGGTATGGAA GCAATAGCTG 
    ATCAGCAGAA GCTTACGTTC AAGAATTCTC CGAGCAATCG TGGAAGGTGG 
    TGTAATGTGG GTCTTTGGAG TTATACTCGC CATCCAAATT ACTTTGGCGA 
    GATATTCCTT TGGTGGGGAA TATTTGTAGC ATCTACTCCA GTTCTCTCAG 
    GAGCTGAATG GCTCGTGATC CTCGGACCTG TATTCCTGAC GCTCTTGCTT 
    CTCTTCGTTA GTGGAATCCC ACTTCTGGAG GCTTCTGCTG ATAAGCGCTT 
    TGGACAGAAC GAAGAATACC GCACGTACAA GAACACTACA AGTCCTCTTA 
    TCCCACTACC ACCAGCTGTG TATGGAGCCC TGCCTGGATG GTTCAAGATG 
    GGCTTCCTCT TCGAGCTCCC GCTCTACAAT CGTGTACCGC AACGTGATCC 
    TGTCAGCTGA TGATATCAGT GATCTCTAGC GATTGTTGTG TACAATGTGT 
    GTAGTATAAG ATACTTCCTC CGTTTCACAA TGGAAGTCAT TTTAGCATTT 
    TCCACATTCA TATTGATGTT AATGAATTTA GATAGATATA TGTCTAGATA 
    TATTAACATC AATATGAATA TGAAAAATGC TAGAATGACT TATATTGTAA 
    AACGGAGGGA GGACATTGTT ATTGTCGATA AGTGATTTCT TTTCGCTTTG 
    GTTATTAGGG CAGTGAAATT GTATCCACGT GAAAACATTA CGTTCCCTTC 
    AGCTCTGTTT CT

    Gene models with high sequence identity

    1. AT1G73650.3 [+] show detail - Protein of unknown function (DUF1295)
      E-value: 9e-107; Score: 384.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1295 3.1e-91
    ProfileScan 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 9.52

    See the detailed result >

    AT1G73650.3

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1295)
    Computational Description
    FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G18180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR