K40646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40646

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K40646

Determination of introduced cDNA(s)

  • J013098O13 - Rice Full-length cDNAs - Original: J013098O13

    full reading [+] show sequence

    Nucleotide sequence: J013098O13 - full reading 
    GCCACTTCCC CTTCGAATCT AGGGTTACGA CTCCGACCAA CCTCGCCGTC 
    GCCAAGCTCG CCGACTCACC GGCCTTCCTC GTCGGCCGCG GCGCAGAGGG 
    AGAAGGTGGG GAGCGAAGAT GCCGCAGCGG CACTCGAAGA ACAACAACGA 
    CCTCGCCTTC TTCACGTACG AGGAGAAGCG GAAGCTCGGG TACGGCACGC 
    AGCGGGAGCG CCTCGGCAAG GACTCCATCA AGCCCTTCGA CGCCTGCTGC 
    CTCTGCCTCA AGCCGCTCAT CCACCCGCTC TGCTGCCCCA AGGGCCACAC 
    CTTCTGCAAG GAGTGCATCC TCGAGTGCCT CCTCGCCAGA AGAAGGACAT 
    CAAGCGCAAA CTTGCTGCTC ATGAGGCCCA GAAAAAGCTG GAGAAGGAAG 
    AGGAGGATGA GAAGCGTATG CTGCAAAAGT CCAAGGAGTT GGACGCTTTT 
    GATCAGCAGA ATCATGGAGC CGTCCCCCAA TACCACGATC GCAGCGGCTC 
    TGAAGACAAG AATGGTTTTC ATGGAGCAAA CAGCGTGAAG GTTACTTCCT 
    TTGAGGAGGA AGCCCTTCGC AACATGAAGG CATTCTGGCT TCCATCAGCT 
    ACACCTGAAG CTACTGCCAA AGTAGAAGCT CCCTCCACTG ACACAATCTG 
    CCCCGAGGGA CAGGAGAAGC TCAAGTTGAA ATCGCTCTTC CCTATCTCCT 
    TCACTGAAGA AAACACCGAC CAGAAAAACA AGAAGTCGGT GTAGAAGAGC 
    TACATGTGCC CCAGTTGCAA GTCTACCCTA ACAAACACCA TGTCCCTGGT 
    GACGATCAGC ACGTGTGGCC ATGTCTTCTG CAAGAAGTGC TCTGACAAGT 
    TCCTTGTAAC TGATAAGGTC TGCTTGGTGT GCAACAAACC GTGCAAGGAG 
    AGGAATTTCG TTCCTTTGGA AAAAGGAGGA ACTGGATTCG CTGCCCATGA 
    TGAGCGTCTA GAGGCGAGAG ATTTCAAGCA TTTGGGGAGT GGTTCTGGAC 
    TGGGTTTAGT GAAACCTGCC CCAAAGAACT ACTAGCCTCA AAATATCTTA 
    GCTGCTGTTG TATATTATTT ATGTTAACCT GAAAATTTTG TTTCAAGCAT 
    CCCCTTTCGC TGTGAACAGT CTGGAGCAAA TTCAGTCTTG TTATGCTAGT 
    GGCACTATGG TTGCTAATTG CAGCTTTGCC T

    Gene models with high sequence identity

    1. AT1G61620.1 [+] show detail - phosphoinositide binding
      E-value: 8e-122; Score: 144.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 2.3e-10
    superfamily RING/U-box 5.9e-08
    HMMPanther SUBFAMILY NOT NAMED 2.8e-68
    HMMPanther ENOS INTERACTING PROTEIN 2.8e-68
    HMMPanther SUBFAMILY NOT NAMED 4.1e-52
    HMMPanther ENOS INTERACTING PROTEIN 4.1e-52
    HMMPanther SUBFAMILY NOT NAMED 7.6e-50
    HMMPanther ENOS INTERACTING PROTEIN 7.6e-50
    Gene3D no description 2.7e-05
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Zinc finger, RING-type 10.365
    HMMPfam Rtf2 1.4e-08

    See the detailed result >

    AT1G61620.1

    Model type
    Protein coding
    Short Description
    phosphoinositide binding
    Computational Description
    phosphoinositide binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Nitric oxide synthase-interacting (InterPro:IPR016818), Zinc finger, RING-type (InterPro:IPR001841); Has 510 Blast hits to 510 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 129; Plants - 138; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR