K38706

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38706

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38706

Determination of introduced cDNA(s)

  • J023037M15 - Rice Full-length cDNAs - Original: J023037M15

    full reading [+] show sequence

    Nucleotide sequence: J023037M15 - full reading 
    GCACGAGCTC GCGAGCGGAG ATTTTCCCCC ACGATTTTTG CTGTTCATCC 
    GTGTGGGGGA GGAGAGATTC CGCGTCGATT GGTGGTCGGA TCGGAGCGAG 
    GAGAAGCCCC CGTGTTCTTG GCTTTTTTTC CCCCGATCGA ATCCGGTGGA 
    AAGCGAGCAA TAAAAACCAC TTCTTTTCTT TTTCGTTTCT GGTTTTCTTT 
    TTCTTGTTGG GTTTCTCTTC CTCCTGCTCG AGTTTGATCT CTTGATTCGT 
    GAGGAGTGTG GCGAAGATGA GCGCGAGTTT CCTCGAGATC CAGCCTTCGG 
    AGCTCTCATT CCCCTTTGAA CTACTGAAGC AGAGCTCATG CTCCATGCAA 
    CTCACCAATA AGACCGACCA TTATGTTGCA TTTAAGGTCA AAACAACCAA 
    CCCAAAGCAA TACTGTGTGC GCCCTAATAT TGGCGTCGTA TTGCCGGGGT 
    CTACATGTGA TGTTACAGTG ACGATGCAAG CACAGAGGGA GGCACCTCCG 
    GATATGCAGT GCAAGGATAA GTTCCTTGTT CAAAGTGTTG CAGCTGAGAA 
    TGGTGCAACA ACTCAAGATA TTAGTGCAGA AATGTTCAAT AAGGTGGCAG 
    GAAAGGTTGT TGAGGAATTC AAGCTACGTG TAGTCTATGT GCCAACGACT 
    ACATCCTCCG CAATGCCTGA AGACTCTGAA CAAGGAAGTT CTGCTCGGCC 
    ATTTGCACAA GAAAATGGTA TCCATAATTC AACAATGCCA CAACCTGTTT 
    TTAGATCATC TGCTGAACCA ACAAAGGAGA GGCCCACAGA GCCATCGTCC 
    ATGATCTCCA AACTAAATGA GGAGAATAGG GTTGCTATTC AGCAAAACCA 
    GAAGTTACGA CATGAGCTGG AGCTCCTACG GAAAGAAAGC AGCAAAAGCA 
    GTGGCGGTTT CTCCCTCACC TTCTTGGCCA TCGTTGGTCT TCTCGGCATC 
    ATCGTGGGCT ACATCCTCAA GAAGACATAG AAGAGGTAGA GGTTCCCAAC 
    AAAAGTTATA CTCCCAGGAA AGGATACCCC TCATATTGGT ATGCCGCGCA 
    TCGTGTTTTT TTCCCTCCTA AAAGGAGCAC CTGTCCTAAC TTGTAACAAC 
    AATACTCCTC CTAGATGCCA TGGTTTGTGT ACATTATGGT GGTTTTACGC 
    TTCGCTGCGG TTTTTTTTTT TTTTTTACAT TGACTAGGCT TGATTTTTAA 
    GAGTTTTAAC TGGTGCAACT GTTTGACATT CTCCATAATC TTTTATTCTT 
    TCTTTCTGAT CAATTTATCA TCATACTGTT AAACTTTAAA TTTCTCTTCC 
    AGTCACATTG GCAGGCAGTG CTTGATCTC

    Gene models with high sequence identity

    1. AT4G00170.1 [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
      E-value: 6e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Major sperm protein 31.192
    HMMPanther VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) 4e-58
    Gene3D PapD-like 2.7e-24
    HMMPIR Vesicle-associated membrane protein 7.5e-103
    superfamily PapD-like 6.4e-39
    Coil coiled-coil 0
    HMMPfam Major sperm protein 7.5e-33

    See the detailed result >

    AT4G00170.1

    Model type
    Protein coding
    Short Description
    Plant VAMP (vesicle-associated membrane protein) family protein
    Computational Description
    Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR