K38528

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38528

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38528

Determination of introduced cDNA(s)

  • J033067D20 - Rice Full-length cDNAs - Original: J033067D20

    full reading [+] show sequence

    Nucleotide sequence: J033067D20 - full reading 
    GATGCATGGT AACTATATAA ACTACTATAC CTTCACAGCT AATGTATCTA 
    CTACATCTAA AAACAGCTAG CTAATTAACT CACCATCATG GCGTTCGGAC 
    GCCGTTCACT CTTCTTGCCG GTGGTGGGCG TCGCGGCCAT CCTGCTGCTC 
    GCCGCCGGCC ACGCGACCGC CGTCAACACC GGCGAGACCG TCGTGTTCTG 
    GGGCCGGAAC AAGGACGAGG GCTCTCTCCG TGAGGCCTGC GACACCGGCC 
    TCTACACCTC CGTCATCATC TCCTTCCTCG CCGTCTTCGG CCACGGCCGC 
    TACTCCCTCG ACCTCTCCGG CCACGACGTC TCCGCCGTCG GCGCCGACAT 
    CAAGCACTGC CAGTCCAAGT ACATCCCCGT GCTCCTCTCC ATCGGCGGCC 
    AGGGCGGCGC CTACTCCCTC CCCACCAACG CCTCCGCCGC CGACGTCGCC 
    GACCACCTCT GGGACTCCTT CCTCGGCGGC GGCCGAGCCG GCGTGCCCCG 
    CCCCTTCGGC GACGCGGTGG TGGACGGCGT CGACCTCTTC ATCGACCAGG 
    GCGGCGCCGA GCACTACGAC GAGCTTGCCC GGCGGCTGTT CAGCCACTAC 
    AAGTTCGAGA TGCTGCTGAC GGCGACGACG AGGTGCTCGT ACCCGGACCA 
    CCGCCTCGAC ATGGCGCTGG CGACGGGGCT GTTCACGCAC ATCCACGTCC 
    GGGTGTTCGG CGGCGGCGGC GACGCCGGCT GCACGACGCG CCACAGGGCG 
    TCGTGGGAGA GGTGGGCGGC GGCGTACCCC GGCAGCCTGG TGTACCTCGG 
    CGTGGTGGCC TCGCCGGAGC AGGACGCCAA CGCCTACCTG CCGCGTAAGG 
    TTCTCTTCTC CGACGTGCTC AGCCACATCG TCGAGAAGCC CAACTATGGT 
    GGATTGATGA TCTGGGATAG GTACTACGAC AAGAAGACCG GCTACTCCGC 
    TGGAAAAGTT TTTTAATTAA CTTCCAATAG ACTGGAAATT AGTTAACCAT 
    GGTGACCAAT ACTAATGAAT AAGGATTTGT AGAAAACAAG GATGTGGTTT 
    TGTCAATGAT GTGCTTCTAT GCTCATAAAT AAATACACGG ACTTAATAAG 
    AGGATC

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 3e-48; Score: 189.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 7.9e-09
    FPrintScan PRICHEXTENSN 7.9e-09
    FPrintScan PRICHEXTENSN 7.9e-09
    FPrintScan PRICHEXTENSN 7.9e-09
    FPrintScan PRICHEXTENSN 7.9e-09
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.4e-88
    superfamily Glycoside hydrolase, catalytic core 4.4e-73
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 1.2e-13

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR