K37504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37504

Determination of introduced cDNA(s)

  • J023062B01 - Rice Full-length cDNAs - Original: J023062B01

    full reading [+] show sequence

    Nucleotide sequence: J023062B01 - full reading
    GGCGATTAGC CCCCAAGCAT TTTTGCAAAA CTTGTTTGGA ACTTTGGCCA 
    CCGCCGCCGG CGCCGCGACG CGACGACGGG AAGGCGCCGG CCGCCGGCGG
    CCAGCGGCGC TGGCGGTGAA GCCGATCGAG GAGGCGTCCT CCACCGCTCG
    GCGACCAACC GCCGACGGCG ACGGCGATGG CGACAGCGCG CACCATGCAG
    GGGGCCCCAC TCTGTTTACT CCCCCGCGTC CGCGACCGCG AAGTCTCCGG
    TCTCCGCCGC GCCCGCGTCG CCTCGCCCTG ACCACCACCA GTCCACCGCC
    GCGGCCCACA CGGCACAGCC TCTCACAAGG GAGGAAGGGG GAAGTGAGCC
    CCCGCGCCAC GGCCACGCGC CGCGGGCTTC CTCCTCCTCC TCCTCCTCCT
    CCTCCCCGAG CCGCACGCCG ATCGATGGCC GCGCGGCGGC GCCTCCTCCT
    GCTCCTCGTC CTCCTGCTGT GCCGCCTCGC CGCCGTCCTC CCCACCTCCG
    AAGTGGAGGC CTTGCAGGGT TTCATGGCAG GGTTCGCCGG CGGCAACGCG
    GCGTTCCAGA GCTGGGACGC GTCCGCGCCC AACCCTTGCA CCTGGTTCCA
    TGTCACCTGT GGCCCGGGGA ACCAGGTCAT CAGGCTGGAT CTCGGGAACC
    AGTCGCTGTC CGGCGAGTTG AAGCCCGACA TTTGGCAGCT GCAAGCATTG
    CAATCCCTGG AACTTTATGG CAATAGCATC AGCGGGAAAA TACCTAGCGA
    GCTTGGGCGG TTAGCTAGCT TGCAAACTTT GGATCTCTAC TTGAACAATT
    TCACCGGTGA AATACCGAAT GAACTGGGAA ATTTATCGAA GCTCAGTAAC
    CTCCGTCTGA ACAACAATAG TCTGTCAGGT GCAATTCCCA TGTCATTGAC
    AACAATCCAA AATCTTGAAG TGCTGGACTT GTCACATAAC AACTTGTCGG
    GAATAATACC GACCAATGGT TCATTTTCAC ACTTCACCCC AATCAGTTTC
    TCCAATAACC CACGTACTTT CGCAAATTCT TCTGATTCGC CATCAAATAA
    CTCGGGAGCA GCGGTGCCAT CAGGAAGAAG TAGTGCATCC AGCATTGGAA
    CAATTGCTGG TGGAGCTGCT GCAGGTGCTG CCATGTTGTT TGCTGCTCCT
    ATTGTATTGT TCGCATGGTG GTGGCGGCGT AAACCACATG ACCAATTCTT
    TGACCTACTA GAAGAAGAAA CTCCAGAAGT TCATCTGGGT CAGCTTAGAA
    GGTTCACACT GAGAGAACTG CAGGTGGCAA CAGATAACTT CAGTCAAACT
    AATTTGCTAG GGAGAGGAGG CTTTGGAAAG GTCTATAAAG GAAGGTTGTT
    AGATGGTTCA TTGATAGCAA TAAAAAGACT AAATGAAGAT CGAATTGGAA
    CTGGAGAGCG GCAGTTCCTA ATGGAAGTCG AGATCATCAG CATGGCCGTG
    CATCAAAATC TCCTACGCCT CCAGGGGTAT TGTATGACAC CCACCGAGCG
    GCTGCTTGTG TATCCTTACA TGGAGAATAA AAGCCTTGAG ACACGCTTAC
    GAGAGTGCTC TGATTCACAA CAACCACTTG ACTGGCCAAC ACGAAGAAAA
    ATCGCGTTAG GGTCTGCAAG AGGGATCTCT TACTTGCATG AAGGATGTGA
    TCCCAAAATT ATCCATCGAG ATGTCAAAGC TGCTAACATT TTGTTGGATG
    AAAAACTTGA AGCAGTTGTT GGTGATTTCG GTCTGGCTAG AATTATGGAT
    TACAAAGTTT CCCATGTTGT AACCGGCGTG ATGGGGACAT TGGGGCACAT
    TCCCATGGAG TACCTGACTG CAGGAAGAAC TTCAGATAAA ACTGATGTTT
    TTGGGTATGG AATCATGCTT TTTGAACTGA TTAGTGGGAA AAGGGGATTT
    GATCTTGTTG GTCTTGCAAA TGAAGAAAAT GCCAGAGTGC ATGATTGGGT
    GAAGAAACTG CTGGAAGAGG ACAGGCTGGA GGTGCTGATT GACCCAAACT
    TACTGGAAAT CTACAATGGT GGGGAACAGG GAGTGCGAGA GGAGATGAGG
    TTGCTGGTGC AGATTGCGCT GCTCTGCACC CAGGAGTCCG CTCCAAGCCG
    CCCCAGAATG TCAACGGTGG TGACAATGCT AGAAGACGGT ATCGCGGAGC
    ACTGGGATGC ATGGCAAAGG AAGACGATTG TGCAGGCAAG CCTGCAAGGA
    GGACAGGGCG TTTCTGAGGC TCGCAATGAC TCTGTTGCAA ATCTCCCTCC
    AGACACATTG TCTGGTCCAA GGTGACTGCC ACCTTAAGGA CTATGAAGGG
    TGGTTCTTTT GTAGAGCTTA GTGAACTTAG ACAGAACACT TGCCATTCTT
    AAAAAAACAG CAGATTATAT GTTTTCTTGT AGCATGTGTA TGTATTTTAG
    TTTTTCCCCT TTTTTTCAAG TAATTCATAA TCACTACT

    Gene models with high sequence identity

    1. AT1G71830.1 [+] show detail - somatic embryogenesis receptor-like kinase 1
      E-value: 4e-175; Score: 612.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 33.559
    HMMSmart Serine/threonine-protein kinase domain 3.7e-22
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.2e-22
    HMMPfam Serine/threonine-protein kinase-like domain 8.1e-39
    HMMPfam Leucine-rich repeat 0.21
    HMMPfam Leucine-rich repeat 0.0092
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 3.4e-08
    Gene3D no description 1.1e-39
    Gene3D no description 1.1e-21
    Gene3D no description 3.4e-41
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 2.4e-71
    superfamily L domain-like 7.7e-39
    HMMPanther SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1.1e-214
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-214

    See the detailed result >

    AT1G71830.1

    Model type
    Protein coding
    Short Description
    somatic embryogenesis receptor-like kinase 1
    Curator Summary
    Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later
    Computational Description
    somatic embryogenesis receptor-like kinase 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 2 (TAIR:AT1G34210.1); Has 181670 Blast hits to 121787 proteins in 4268 species: Archae - 123; Bacteria - 18224; Metazoa - 45784; Fungi - 8994; Plants - 88758; Viruses - 411; Other Eukaryotes - 19376 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR