K37504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow) low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37504

Determination of introduced cDNA(s)

J023062B01 - Rice Full-length cDNAs - Original: J023062B01

full reading [+] show sequence

GGCGATTAGC CCCCAAGCAT TTTTGCAAAA CTTGTTTGGA ACTTTGGCCA 
CCGCCGCCGG CGCCGCGACG CGACGACGGG AAGGCGCCGG CCGCCGGCGG 
CCAGCGGCGC TGGCGGTGAA GCCGATCGAG GAGGCGTCCT CCACCGCTCG 
GCGACCAACC GCCGACGGCG ACGGCGATGG CGACAGCGCG CACCATGCAG 
GGGGCCCCAC TCTGTTTACT CCCCCGCGTC CGCGACCGCG AAGTCTCCGG 
TCTCCGCCGC GCCCGCGTCG CCTCGCCCTG ACCACCACCA GTCCACCGCC 
GCGGCCCACA CGGCACAGCC TCTCACAAGG GAGGAAGGGG GAAGTGAGCC 
CCCGCGCCAC GGCCACGCGC CGCGGGCTTC CTCCTCCTCC TCCTCCTCCT 
CCTCCCCGAG CCGCACGCCG ATCGATGGCC GCGCGGCGGC GCCTCCTCCT 
GCTCCTCGTC CTCCTGCTGT GCCGCCTCGC CGCCGTCCTC CCCACCTCCG 
AAGTGGAGGC CTTGCAGGGT TTCATGGCAG GGTTCGCCGG CGGCAACGCG 
GCGTTCCAGA GCTGGGACGC GTCCGCGCCC AACCCTTGCA CCTGGTTCCA 
TGTCACCTGT GGCCCGGGGA ACCAGGTCAT CAGGCTGGAT CTCGGGAACC 
AGTCGCTGTC CGGCGAGTTG AAGCCCGACA TTTGGCAGCT GCAAGCATTG 
CAATCCCTGG AACTTTATGG CAATAGCATC AGCGGGAAAA TACCTAGCGA 
GCTTGGGCGG TTAGCTAGCT TGCAAACTTT GGATCTCTAC TTGAACAATT 
TCACCGGTGA AATACCGAAT GAACTGGGAA ATTTATCGAA GCTCAGTAAC 
CTCCGTCTGA ACAACAATAG TCTGTCAGGT GCAATTCCCA TGTCATTGAC 
AACAATCCAA AATCTTGAAG TGCTGGACTT GTCACATAAC AACTTGTCGG 
GAATAATACC GACCAATGGT TCATTTTCAC ACTTCACCCC AATCAGTTTC 
TCCAATAACC CACGTACTTT CGCAAATTCT TCTGATTCGC CATCAAATAA 
CTCGGGAGCA GCGGTGCCAT CAGGAAGAAG TAGTGCATCC AGCATTGGAA 
CAATTGCTGG TGGAGCTGCT GCAGGTGCTG CCATGTTGTT TGCTGCTCCT 
ATTGTATTGT TCGCATGGTG GTGGCGGCGT AAACCACATG ACCAATTCTT 
TGACCTACTA GAAGAAGAAA CTCCAGAAGT TCATCTGGGT CAGCTTAGAA 
GGTTCACACT GAGAGAACTG CAGGTGGCAA CAGATAACTT CAGTCAAACT 
AATTTGCTAG GGAGAGGAGG CTTTGGAAAG GTCTATAAAG GAAGGTTGTT 
AGATGGTTCA TTGATAGCAA TAAAAAGACT AAATGAAGAT CGAATTGGAA 
CTGGAGAGCG GCAGTTCCTA ATGGAAGTCG AGATCATCAG CATGGCCGTG 
CATCAAAATC TCCTACGCCT CCAGGGGTAT TGTATGACAC CCACCGAGCG 
GCTGCTTGTG TATCCTTACA TGGAGAATAA AAGCCTTGAG ACACGCTTAC 
GAGAGTGCTC TGATTCACAA CAACCACTTG ACTGGCCAAC ACGAAGAAAA 
ATCGCGTTAG GGTCTGCAAG AGGGATCTCT TACTTGCATG AAGGATGTGA 
TCCCAAAATT ATCCATCGAG ATGTCAAAGC TGCTAACATT TTGTTGGATG 
AAAAACTTGA AGCAGTTGTT GGTGATTTCG GTCTGGCTAG AATTATGGAT 
TACAAAGTTT CCCATGTTGT AACCGGCGTG ATGGGGACAT TGGGGCACAT 
TCCCATGGAG TACCTGACTG CAGGAAGAAC TTCAGATAAA ACTGATGTTT 
TTGGGTATGG AATCATGCTT TTTGAACTGA TTAGTGGGAA AAGGGGATTT 
GATCTTGTTG GTCTTGCAAA TGAAGAAAAT GCCAGAGTGC ATGATTGGGT 
GAAGAAACTG CTGGAAGAGG ACAGGCTGGA GGTGCTGATT GACCCAAACT 
TACTGGAAAT CTACAATGGT GGGGAACAGG GAGTGCGAGA GGAGATGAGG 
TTGCTGGTGC AGATTGCGCT GCTCTGCACC CAGGAGTCCG CTCCAAGCCG 
CCCCAGAATG TCAACGGTGG TGACAATGCT AGAAGACGGT ATCGCGGAGC 
ACTGGGATGC ATGGCAAAGG AAGACGATTG TGCAGGCAAG CCTGCAAGGA 
GGACAGGGCG TTTCTGAGGC TCGCAATGAC TCTGTTGCAA ATCTCCCTCC 
AGACACATTG TCTGGTCCAA GGTGACTGCC ACCTTAAGGA CTATGAAGGG 
TGGTTCTTTT GTAGAGCTTA GTGAACTTAG ACAGAACACT TGCCATTCTT 
AAAAAAACAG CAGATTATAT GTTTTCTTGT AGCATGTGTA TGTATTTTAG 
TTTTTCCCCT TTTTTTCAAG TAATTCATAA TCACTACT

Gene models with high sequence identity

AT1G71830.1 [+] show detail - somatic embryogenesis receptor-like kinase 1
E-value: 4e-175; Score: 612.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Protein kinase, catalytic domain	33.559
HMMSmart	Serine/threonine-protein kinase domain	3.7e-22
HMMSmart	Tyrosine-protein kinase, catalytic domain	2.2e-22
HMMPfam	Serine/threonine-protein kinase-like domain	8.1e-39
HMMPfam	Leucine-rich repeat	0.21
HMMPfam	Leucine-rich repeat	0.0092
HMMPfam	Leucine-rich repeat-containing N-terminal domain, type 2	3.4e-08
Gene3D	no description	1.1e-39
Gene3D	no description	1.1e-21
Gene3D	no description	3.4e-41
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Serine/threonine-protein kinase, active site	0
superfamily	Protein kinase-like domain	2.4e-71
superfamily	L domain-like	7.7e-39
HMMPanther	SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE	1.1e-214
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	1.1e-214

See the detailed result >

AT1G71830.1

Model type: Protein coding
Short Description: somatic embryogenesis receptor-like kinase 1
Curator Summary: Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later
Computational Description: somatic embryogenesis receptor-like kinase 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 2 (TAIR:AT1G34210.1); Has 181670 Blast hits to 121787 proteins in 4268 species: Archae - 123; Bacteria - 18224; Metazoa - 45784; Fungi - 8994; Plants - 88758; Viruses - 411; Other Eukaryotes - 19376 (source: NCBI BLink).
Link: InterPro Scan - TAIR