K37201

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37201

Determination of introduced cDNA(s)

  • J033125A18 - Rice Full-length cDNAs - Original: J033125A18

    full reading [+] show sequence

    Nucleotide sequence: J033125A18 - full reading 
    GACTCTCATC ACTGATTACA CCCAACAACA ACACAATCCA ACCATCAACC 
    ATACTACACC AGAACACAAC AATGGCGTCC CAACGCCGGC GATCATCCGC 
    CGCCACCATC GCCGTCTTCT TCTTCCTCCT CTCCTTGTTA GCGGTGTTCT 
    TCCAGCCGGC CGCCGCCTAC TACCACCCTC AGGGGAAGAG GCAGACCGTC 
    GCCGTCTTCT GGGGACGCAA CAAGGCCGAG GGCTCGCTCC GGCAAACCTG 
    CGACACCGGC GACTACAACA TCGTCATCAT CTCCTTCCTC AGCGTCTTCG 
    GCCATGGCAA GTACTGGCTC GACCTCTCCG GCCACGACCT CCGAGACGTC 
    GGCGCCGACA TCCGCCACTG CCAGTCCAAG GGCGTCTACA TGCTCCTCTC 
    CATCGGCGGC GACGGCGACG GCTACTCCCT CCCTTCCTCC AAGTCCGCCG 
    CCGACGTCGC CTACAACCTC TACCACTCCT TCCTCGGCCG CCCACGCGCC 
    GGCATCTTCC GCCCCTTCGG CGACGACACC ATCGTCAACG GCGTCAACTT 
    CTTCATCGAC CACGGCCCCG GCGACCACTA CGACGACCTC GCCAACCGCA 
    TCAACGACTA CAACCAGAAC ATCCACGACC CCATCGGCAT CATGCTGACG 
    GCGACGGTGA GGTGCTCGTA CCCTGACCCG AGGATGAAGA AGGCGCTGGA 
    CACCAAGCTG TTCACGCAGA TCCACGTGAG GTTCTACGAC GACCCGAGGT 
    GCTCGTACAA CCACGCGGGG CTCGCCGGCG TCATGGCGCA GTGGAACAGG 
    TGGTCGGCGA GGTACCCAAA CAGCCGGATC TTCCTGGGGC TCGCGGCGGC 
    GAACGTGACG GGGAAGAACG ACATGGTCGG CGTCGGGGAG CTCAGCCGGA 
    AGCTGCTGCC GGCGGTGCAG AAGACGGAGA GCTACGCGGG AGTGACGCTC 
    TGGAACAGCT ACTACGACTC CAAGACTCAC TACGGAAGAT ATGTCAAGCA 
    CTGGGCTTAA TTTAATCAAT TAATTTAAGC TCAGATCAAC CAGCTATAAT 
    AATCTACTAC AGTGCATGCA GCTCAATCAC TATCGCAGTA ATCACGGTGT 
    CATGGGTTTA ATGTAGTAAA CTACCCCCAC TTAATTACAT GTTGTTTGTT 
    GTTTTTTGAT CTTGGTCTCG AGAGCAAGTG TTTTTTTTAT TTGCACAACT 
    CTAGTGTGTC ATATATGCAT GTGTGATCGA TGTATCTGTA CTTTTCTTTT 
    TCCCTTTTTT CCTTTTTGCA ACTGTGTATG TATTGATGTA TAATGAAGTT 
    GTACATGATG TTTAATG

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 2e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 1.4e-10
    superfamily Glycoside hydrolase, catalytic core 8.2e-69
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.4e-85

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR