K36747

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36747

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36747

Determination of introduced cDNA(s)

  • J013038J04 - Rice Full-length cDNAs - Original: J013038J04

    full reading [+] show sequence

    Nucleotide sequence: J013038J04 - full reading 
    GCTCCGCAGC TCACACACCG AAACAACACA CATCGCCACT AGCTCCCTCG 
    ATCCGATTCG GATCGGATCC ATGGCTAACC TCGCCGCCTC CCTCCTCTTC 
    CTCCTCGCCG TCGCGTCGTC CGCCACCGTG CCAGCGCATG GGCGCCGCGA 
    CCTCCTCCCG ACTCGCATCA AGCTGGTGAG GGGAGCCGAC GCCGGCGCCG 
    GCGCCGTGGC CGGCGGGGAC AAGATGGAGT GCGTGTACAC GGTGTACATC 
    CGGACGGGGT CGATCTGGAA GGCCGGGACG GACGCGAACA TCACGCTGGA 
    GCTTGCCGGC GCGGACGGCA ACGGGGTGGG GATCACGGAC CTGCCGTCGT 
    GGGGCGGCCT GATGGGGGAG GGCCACTCCT ACTTCGAGCG CGGCAACCTC 
    GACATCTTCA GCGGCCGCGG CCCGTGCATG GCCGCGCCGC CGTGCTGGAT 
    GCGGGTGGCG TCCGACGGCA CCGGCCCGCA CCACGGATGG TACTGCAACT 
    ACGTCGAGGT CACCGTCACG GGCGCGCACA AGGGGTGCGC GCAGCAGCTG 
    TTCACCGTCG AGCAGTGGCT GGCCACCGAC GCCGCGCCCT ACAAGCTCGA 
    GGCCATCCGC GACAAATGCT CCGCCGCAGG AGCGGGCGCC GCCGCGGCGT 
    GAGCGAGTGA CGCGGCCACG CCGTGGGAAA TAAGCTCGTA CGTTATCTGT 
    GGTGAGTGGC ATCTGTAGAC TGTGGGGGGG TGTTCATGTT TTGATTTGTA 
    AAGATGGTAA TCCGCGTGCG TTATCATGTA CGGTGGATGC TACAGACTAT 
    CCGACTAATA ACTTTGCGAG TCGCCGGTGA TGAACCGGCG TTGTGTTTCC 
    TCGGTTACGC ATCGTCGTGC CGCCTCGTCA TACAGAACAA AATGGAGG

    Gene models with high sequence identity

    1. AT4G39730.1 [+] show detail - Lipase/lipooxygenase, PLAT/LH2 family protein
      E-value: 8e-46; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Lipoxygenase, LH2 2.8e-15
    superfamily Lipase/lipooxygenase, PLAT/LH2 1.2e-27
    Gene3D Lipoxygenase, LH2 1.3e-11
    ProfileScan Lipoxygenase, LH2 24.018

    See the detailed result >

    AT4G39730.1

    Model type
    Protein coding
    Short Description
    Lipase/lipooxygenase, PLAT/LH2 family protein
    Computational Description
    Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR