K35833

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35833

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35833

Determination of introduced cDNA(s)

  • J033050A17 - Rice Full-length cDNAs - Original: J033050A17

    full reading [+] show sequence

    Nucleotide sequence: J033050A17 - full reading 
    GGCTGTTTTC TTTTTCTTCT TCTCGCTGAG CTCTACTACT GCACTACACT 
    ACCACTCTCT TCGCGTTCTC TCTCGCTGCA ATGGAGGCGT AGTGTTGGGA 
    GGAGGGAGGG AGAGAGAGAG GGAGAGAGGG AGCTAGGGTT TTTGGGCCGC 
    CGCTGCCTCC TTGAGTTCGT CGTCCCTCCG GCTCCGAACC CTTGGGCGTG 
    CGGCAGTGTA GGCTCCAATG GGGAAGTCTC CGGCGAAGTG GATCAAATCC 
    GTGCTCTTCG GGAAGAAGTC ATCGAGGTCC GGCTCTACCA AGGCGAAAGA 
    TTTATCGAAG GGCTCGAACA ACAAAGGGTA TGCTGCTGCT GGGAAGGATG 
    CTGGGTTTGA GAGCTCCCCG GTGATATCGG AGCCGGTGCT CGTTACACCT 
    CATAACAATG AGGCTGTCCA GGAGGTTGGG AGGGGTGAGA ATTCCAGCTT 
    ACAAGGTGAA GTGGTGGTGC GCGATGTCAG TCAAGACCTG GAGAAGCAGA 
    ATACTGTCGT TTCCGATGCG TCCAACGACC CCGAGAGGTT GAGAGAGGAA 
    CAAGCGGCCG TCAAGGCACA AGCTGCCTTC CGAGGCTATC TGGCACGTCG 
    GGCATTCCGT GCGTTGAAAG GAATCATAAG ACTCCAAGCC CTGATTCGTG 
    GGCATCTCGT AAGGAGGCAA GCCGTTGCAA CTCTTCGTGC AACATGGTTG 
    ATTGTGAAGT TTCAAGCTCT AGTCCGTGGT AGGAATGTCA GACTTTCTAC 
    TAATACCATT CAAGTCAACT GGAAGCTTGT TCAACAACAG TCGGGGAGTG 
    GTAAGCGGGA TGCATGGAAG GAGAAATTGT CTTCAAATGC ATTTGCTCGT 
    AAGCTTTTCG CTTCACCAAT TCTGGTAGAG GCTCTCCATT TTCAATATGA 
    TGAGAGGGAT ACAAATTCAG CCTTCAACTG GTTGGAGAGA TGGACCATAG 
    GTCGTGTCTG GAGGCCCATT TCACATCCAA AGAGAGCTGC TGTTACTGAT 
    GCCAAGCCAC ACACAAGGAA GGCCAGTTAT GCAATGGAAA CAGAGTCAGG 
    GAAGTTGAAG CGCAATTCTC GGAGAAGTTC TGCTGCACCA GTTGAGTCCT 
    CTCAGACGAA CATAGCCATG GAAACTGAAA AATCAAGGCG AAACCCAAGG 
    AAATTCACTA GCTCTACTGC TGATTCAGTG CCCGAAAGTC AGTTAACTGA 
    ACTTGAGAAG GTCAAACGTA ACCTTAGGAA GGTAACTAAT TCTATGGCTG 
    AGGCTTCAAA GGTATCTACT CCTGCAACTG AGATCCCTGA ACGCCAAGAG 
    GTCCAATGTG AGAAACCACA GCGAACTGCA GAAGAAGTTC CAAATTATCC 
    TGAGATCCAA GAACCTCAGA ATGGTAATCT GTTGGAAAAT GCTAAGACGG 
    ATATCCTGGT ACCTGATCTT CAACCTGAAC CGGAGGTTCC TTCTTATCAA 
    GTTGAAACTG AAGAAAAAGT TGCTGAACTG ACTGTTGCTG ACCCTACGGT 
    AGAAACTATG CCGCTGCAAG ATATCCACAA TGAAGAAAAT GCTTTAGTAA 
    ATGATATGGA ACAGAGATCC AAAGAAGAAC CTCTTTCTAC TGAGAGCCTT 
    AAAAGCAGCA AGAGGAGGTC TTCATTCTCA ACCAAGACAG AGTATCCAGA 
    AAATGGTTCA AAGAATTCGC CTGCTGTTCC CAGCTACATG GCTGCAACAC 
    AATCTGCGAA GGCGAAACTG CGGGGACAGA ATTCACCCAG ACTTAGTTCT 
    GACTCTGCGG AGAAAAATGG CTTCACCAGG CGCCATTCCC TCCCATCCTC 
    TAATGGTAAG TTGAACTCGC ACTCGCCGCG TACACAAAGG CCAACCCATG 
    CTGGTGGCAA AGAGGGAGTG AAGGCTGACA AGTCTATGCT ATCATCAAGA 
    GACGCAAGTG AAAGACCTGC CAAAGCTGAA TGGAAACGCT GAAGAGTTCA 
    TCGATCGAGC ACCAAATCCT CCTGTTGGGT TGCGCAACAT TCGGGTGGAT 
    GACGACGATG ATGGCGTCTG CAGTTTGATC CAATTGTTTT GCTTCCGATG 
    TAAAAAAGAT GTTCTCCCCA TCCGTGACAG TGAACCAGCT GCTTTGTTGT 
    GGTTTGTATC TGGTGCGATT TGACTTATTT CTATAGGGTT TTTGCGTCCT 
    TTCCTCTGCC ATGTTCATGT ATAGCTGAAG CGTTTCCGGT TTGCTTTCGA 
    TTTCCCTGCC TCCCCGAGAC ACCCTGCTTT TGTTGAGCAA GAGAGCTGCT 
    GATGTTAGAG AGAACTTGTT GGATTGAACA ATCTTATCCC ATTTGGACAT 
    CTCTTCTGCG TTTTCTTCTT ATAACTGACT AGCGAGTTGT GCCATTCC

    Gene models with high sequence identity

    1. AT1G74690.1 [+] show detail - IQ-domain 31
      E-value: 3e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart IQ calmodulin-binding region 1.3e-05
    HMMSmart IQ calmodulin-binding region 24
    HMMPfam IQ calmodulin-binding region 3.4e-05
    HMMPfam IQ calmodulin-binding region 0.002
    HMMPanther MYOSIN-IX 0.00016
    HMMPanther MYOSIN 0.00016
    ProfileScan IQ calmodulin-binding region 10.859
    ProfileScan IQ calmodulin-binding region 8.37
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 7.8e-06

    See the detailed result >

    AT1G74690.1

    Model type
    Protein coding
    Short Description
    IQ-domain 31
    Computational Description
    IQ-domain 31 (IQD31); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 30 (TAIR:AT1G18840.2); Has 8498 Blast hits to 6418 proteins in 674 species: Archae - 21; Bacteria - 823; Metazoa - 3400; Fungi - 838; Plants - 1044; Viruses - 44; Other Eukaryotes - 2328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR