K35504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35504

Determination of introduced cDNA(s)

  • J013075G07 - Rice Full-length cDNAs - Original: J013075G07

    full reading [+] show sequence

    Nucleotide sequence: J013075G07 - full reading 
    GAGCGTGCTC GGGGTCGCGG CGGCTAACCG TCTCTCTCGC CGCCGTCTCG 
    CACCTCGCGT CGCCGCCGCC GCCGCGAGTG TCGGAGCGGA GGAGAAGGGG 
    AGGGGGGCCA TGGCGAAGGG CGACGACGCG CTGGCGCGGA AGCGCAACAA 
    GGTGCGGCGG AAGCGGATGC GCAGCAGCGA GAACGCCGTG TCGGCCCGCG 
    TCGCCGGCAT CATCGCCTCC AAGCGCCGCC GCAAGTCCGG CAAGCGGCGG 
    GCCTGCGAGG GCATGTGCTT CTCCCTCCCC ACCCCGGAGG ACCCCTTCAA 
    CGACCGCCAC GGCAAGAAGC GGAAGGGCGA CGACGAGCCG ACCGGAGACG 
    CCCCCGCCGC CGCCGCCGCA GGCAGGGACG AATCCAAGAA GAAGAAGAAG 
    AAGAAGAAGA AGAAGGATTC GAGCGCCAAG AAGCAGCCGG CGAGGGAGGC 
    CGCCGCCGCC GCCGCCGCGA ACGCCAAGTC TAGGGAGAAG GACGGGGCGG 
    AGTACGACCG GCCGTCCAAG TTCCTGGTGG TCTGCCTCAA CGCCATCCGA 
    GACGCGGCGG CGTCCGAGGA CGGCGGCGGC GGCGGCATCC ACGACACCGG 
    GTCGTGGGGC GTGGAGCTCT GGAATTGCTG CTCGGCTGCG CCGCCTACGC 
    ACGTGCTCGA CACCAGCGGC GAGTGCGCCA CCCGGGAGAA GACGGCTTGG 
    CTCGTCTCCA CAGCCTGCGA CATCGTCGCC AGGAAGGAGA AGCTCGCTGT 
    GGTCGTCTCT TGCCCCTTCC TACTCTACCT CGTCCCCTCC CAGGAAAAGG 
    CCGTGCAAGT GCGTTCGATT TGCAAGCCTC TGAAATCACT TGGTATCCAT 
    TCCGTCAGTC TGCATCCCGG CGCTTCCATT GAACACCAGA TTTCTGGATT 
    AAAGAGTTGC GAACCGGAGT TCCTTATATC CACGCCAGAG AGGCTGCTTG 
    AACTAATAGC TTTAAAGGCG ATTGACATAT CAGGCGTATC GATGCTGGTG 
    ATTGATGGTC TGAAGTGTTT CACGGACCTT AATGTCAGCG ACAAGCTTTG 
    TTCTATTAGG GATGCCATAT TGAGCAACCC TCAAATAACT ATATTCAGTG 
    ACCCGTCTGA CCGAAGGGTA GCTGCACTGG CAACAAAACT AGTCGGTGGA 
    AAAAAGATCA CAAGGCTTTG TACGAATGAT TCAGTTACTT CTAGAGGTGC 
    ATTCATAACA CAAAAGATAC ACATATGCCC ATCAAAGGAC CAAAAGGCAC 
    CGAAGGTGAA GGAAATTCTT GAACAAATTC TAAATGATCA TGCTAGAAAG 
    ACTGCAAAGG TCCTACTGGT AACCGCAAGT GATCATGAAG CACAGCATCT 
    GTCATCATCC TTGAAATTGC AAAATTGTAC CGTGACCAAT GACTCGCATG 
    GCAACTCTTT TACCATATGC AGCAGTGTTG GGCTGATTAA TGTCCTTGTG 
    AAAGACTGGG AGAACATAAC AACGGCAAAT TTTGAGGACT TCGACACTGT 
    GTTGGTTGCA GACTTGCCTC CTTCAGTTGA CGAATACATT GAAATCCTCG 
    CTGGTGCAAG CTGTCATGTG CTTGTGGGGG AGGTGCATTG CATCTTTTCT 
    AGCGCTGATG CTCTGCTTGC AAAACCCTTG TCTGAGGTTC TTACAAGCTG 
    TGGTCAGGTA GTGCCTGAAT TTCTCAGGAA ACTGGCATCC TCATAGCAGG 
    ATCGGTTTTC TCATGGCAAT CATCATATAG TATACGCTAC CATATTCATG 
    GTTCTTCCAG TCACTAAACA TTTTTGTCAG TTTACTGTTC CTTATCATGT 
    AATTCTCACA GCATAACGAG GATCTTCAGC CTTGTTGTAT CTCTGCAACT 
    TTGTATTTTT TGAATGCGAT CAAGTCCTAG TCTGTGAGAA CCAATTGCTT 
    TTGCATTCAT TAACATTACA TGGT

    Gene models with high sequence identity

    1. AT2G28600.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 4e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DEAD/DEAH BOX RNA HELICASE-RELATED 2.8e-27
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 2.8e-27
    Gene3D no description 1.5e-13
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 9.8e-11
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-12

    See the detailed result >

    AT2G28600.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 18076 Blast hits to 18074 proteins in 2559 species: Archae - 105; Bacteria - 11263; Metazoa - 1996; Fungi - 1558; Plants - 1139; Viruses - 1; Other Eukaryotes - 2014 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR