K35016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35016

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35016

Determination of introduced cDNA(s)

  • J013000B09 - Rice Full-length cDNAs - Original: J013000B09

    full reading [+] show sequence

    Nucleotide sequence: J013000B09 - full reading
    GGTAAGCTTA TCAAAAAAAA AAGAAAAAAA AGAAGTGAAG AAGACGGAAC 
    GGTGGGGCTG TCGAAGCATC CGCGTCCTCC GGGCTCCGGC GACTCCGCGG
    CCGCGATCTC TTCGGCTCTC CCCGCCGGAG ACGGCCACCG CGTCGCCTCC
    CCCTTCAACC GCCTCGATCC CTTCCTGTTC TTTCGGTATT TTGGTGTAGT
    TTGCACTGGT TTCTGGATTT CTTGACAAAA TGGTGAAGCT GACAATGATA
    GCACGTGTTA CTGATGGCCT TCCACTGGCA GAAGGGTTGG ATGATGGACG
    GGATCAGAAG GACGCTGACT TTTACAAGCA GCAAGCTAAA CTTCTATTCA
    AAAACTTATC AAAGGGGCAA CATGAAGCCT CGCGGATGTC AATTGAGACT
    GGGCCATACT ATTTTCAGTA TCCTTATGTT CTCTGTGGCT ATTTTATTCT
    GGGTATTGTT CATGACTGTT GAATTTGTTT CTGTTCTTTT GCAGTCCGTG
    TGATATAGCA TATCTGGCTG CTAAATATTG ACATCTGAAT GTGCACAGTC
    ATTCGGATAT TTTTTTTTAT CAAGTTCACA CGTTGCATCT CATTACATTT
    CTTTGCTGGT AATGAAGATT TCAAATATGC TGGATAGTTG TATAGCTACA
    CAGGTAAACA AGAAAATGGG TAGGCATTTG ATGAATCTAT GTGATTGGTC
    CAAATTATCA ATCATGACTG TACAATAGCT AGTCTATATA TTCTCTAGTA
    TTTCTCTATT TTCTATAGCA TTCACTTAAT TTTTAGGATC TTACAACTTG
    CAAGCACATG GTACTTATTT GATGCTCTTG TTGATCTTGC TATTAATATT
    TGAGTCCATT TATCATTACT AACTTTAAGA TCATAAGCTT ATTTAACCTG
    AGACTTACAT CGTGTTCTGT TGAGAAAAGG CAGCACTCAG CACCCAGCTA
    ATGTTGTTCT TGTAATGCAT GTTTTAGCTT GTATTGGTTT GCTAAGTTTA
    TTGCAGTGTG ATCTTGTTGA ACCTTAATTC AAATAAACAG TTACATCATT
    GAGGGGCGAG TATGCTATCT GACTATGTGT GACCGTTCTT ATCCAAAGAA
    ACTCGCATTC CAGTACCTAG AAGATCTGAG AAATGAATTC GAAAGAGTCA
    ACGGCAGTCA AATCGAAACA GCTGCAAGGC CGTATGCGTT TATTAAGTTT
    GAACCCAGAG GAATCTTGCG AAATTAAATG ATGAGCTCTA TGAGGTGCAT
    CAAATTATGA CTCGTAATGT TCAAGAAGTT CTTGGTGTCG GTGAAAAGCT
    AGACCAGGTC ACTGAAATGT CAGCTAGGCT GACTTCTGAC ACAAGAATCT
    ATGCAGATAA GGCTAAGGAT CTCAATCGCC AGGCCTTGAT TCGGAAGTAT
    GCCCCTGTTG CCATTGTGAT CGGTGTAGTT TTGATGCTCT TTTGGTTGAA
    GAACAAGATA TGGTAACTGC ACTAAACTAA GGAAGCTGGG CCTGCATTAC
    CACACTGGTG CAAGAAAAAC CGAAAATTTA GGTAGATTCT GGATCAAGAG
    ATATCAAGAG ATGCTTTGGT GACTTGTATC CCGTATCTGC CCATTCAAGC
    GACTACTTCA GCTGCCTTTC ACCCTCCTCC CGACAAGCTA TTCAAGCCAA
    TTCGTTGTAG CATACAGTAG ACCTTATAAC GGAACTCGGA CTTGATTTTG
    TGAACCCTTG GAACCGTATA TACAAGAGCT CTGTAGAGTT GAATTTTTTT
    ATATTGGGAT GATATTGCAT TTTATTTTGC AAACTCATGT AAGAATTCAG
    GCTGAATATC CTATATTACA ATATCTCTGC TGCATGTGAC TC

    Gene models with high sequence identity

    1. AT1G11890.1 [+] show detail - Synaptobrevin family protein
      E-value: 1e-64; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Longin-like 2.19999900980708e-16
    ProfileScan Longin 0
    HMMPanther PTHR21136:SF4 1.10000150671642e-24
    HMMPanther PTHR21136 1.10000150671642e-24
    Gene3D Longin 2.19999900980708e-16
    HMMPanther SNARE PROTEIN SEC22 6.8e-14
    HMMPanther SNARE PROTEINS 6.8e-14
    HMMPanther SNARE PROTEIN SEC22 4.1e-26
    HMMPanther SNARE PROTEINS 4.1e-26
    HMMPfam Synaptobrevin 8.9e-19
    ProfileScan Longin 11.494
    ProfileScan Synaptobrevin 13.902
    Gene3D Longin 6.2e-09
    Gene3D no description 2.2e-07
    superfamily Longin-like 6.1e-09

    See the detailed result >

    AT1G11890.1

    Model type
    Protein coding
    Short Description
    Synaptobrevin family protein
    Curator Summary
    member of SEC22 Gene Family
    Computational Description
    SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR