K35006

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35006

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35006

Determination of introduced cDNA(s)

  • J013111M09 - Rice Full-length cDNAs - Original: J013111M09

    full reading [+] show sequence

    Nucleotide sequence: J013111M09 - full reading
    GAGGGGCCAT GAACTTTCAC ACTCCTCTCT CTCTCTCTCT CTCTCTCTCT 
    CTCTTCCAGC TGAGTGAGCT GCTTGCACGC CGCCTTCCTG CTCGTCGCCT
    TTCGCCGCCG CCATCTCTCT CTACTCTACT CTAATGCCTC GGCGCCTTTA
    CTAGTTAATT AGTTCTTCTT TAGCATCGTA CCATAATCTG CCCACACGGC
    TACAGACTCT TGATTGGTTT GAGATTGAGC TATTGGGTTG GTTCTTGGCA
    AGAGAAGGCA AGGCCAAGAA AGGTGGCAGG TTCTTGTCAA TCTCCAAATT
    TTCCCATTAA ATTTGCGATT TCTTCCCCAC TCCTCCCCGT CAGAACCGAG
    GTTTTACCAG GAGTGCTTCA GCATTTGGGG TGTGGAGTTA TTGCAAAGCA
    ACCTCGATTC CTGCACCGGT TCCTCGATTT GATGCTGAAG AAATTGAGCA
    AAGCTGGTCT TCGTTTTGGT AAAACCCCCA GCTTTCTCAG GGCGGAACAG
    TAGAAGAAAA AGATTGGAGG AGAGGAGAGG AGAGGAAGGG TTGGTTTTGG
    GAGGATGATT CAGCTGCTGT TCTTGGTGGT GTTGGCGGAG GCGGCGGTGG
    CGCTGCTGCT GATGGTGAAG GTGGGGCCGC TGCGGGAGGT GGCGATGCGC
    GGCGTGGAGC AGGCGAAGAC GGGGAAGGGC CCGGCGACGG TGAAGACGCT
    GGCCTGCACG CTCTCGGTGA TCCTCATGTC CAGCGTCGCC AGCATCCTCA
    AGATCCAGAA CAGGGGCCTC AAGCTCGGCA CCGTCAGCCC CATGGACCAG
    GTGCTATGGC GGACTCACCT CCTCGAGGCC TCCCTCATCG GATTTACTCT
    ATTCCTTGCA TTTGTCATTG ACCGGTTGCA CCACTACCTC CGAAAACTGA
    TTACACTGAG GAAAGCAGCC AACACATCAA GAGAGGAGGT CGAGAAACTT
    CAAATGGAGA ACCGGTTATT CCGTGAAAAG GAGGAGAAAT CTTCCAGTGA
    AATCAAGAAG CTCCACCAGG AGATTGCTAA GCTAAACGAG AGTATGAAGA
    AGCTGAAATC GGAGTCTGAA GATCACGAGA GGAAGGTGTT GGAAGCGGAG
    GCCCATGTGA ACGCCCTACA GAAGCAGTCG GAGGAGCTTC TCCTGGAGTA
    CGACAGGTTG CTGGAAGACA ACCAGATTCT ACAATCTCAG CTTCACTACA
    AAGGCTGAAA CAGTTAACCT GGGGCATGCA ACTCAAAGTG CTCGTTACCA
    AGACTCGTAG ACTTACCAAA TGTCAGTGCA GAGCGAAGGT ATTGGTGAAT
    GTGATGCTTG GAATCCTTGC TCTAACTTGT GGTGTTGGGT TGATGTACTA
    GTGTGTGCAT TTGTAGTTTT GAGGAGTATA AAAGCCAGGG ATGATATATG
    GTGAAATGGT TATGAATCTG GTATCAGTTC ATGTCGCCAT GCAGGGTTGT
    TGATCTGAAA ACTGAATTGA ACTTGTGGGC TGCGGCCATG CCTCTATTCA
    GGCCTTGATC TGAAAATCTG AAAAGGAGGA AAGTTTCCTA CTGAAATGAA
    TGCTCTGTTA GCTTTGCTAA AACCGGGCTA GGATGGATCG TTTTATTTGT
    GTGAATAACT TAGAATATAT TCTGGTTTAC TGTGC

    Gene models with high sequence identity

    1. AT5G48660.1 [+] show detail - B-cell receptor-associated protein 31-like
      E-value: 8e-51; Score: 198.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther BCR-ASSOCIATED PROTEIN, BAP 9.9e-85
    HMMPanther B-cell receptor-associated 31-like 9.9e-85
    HMMPfam B-cell receptor-associated 31-like 1.1e-08
    Coil coiled-coil 0

    See the detailed result >

    AT5G48660.1

    Model type
    Protein coding
    Short Description
    B-cell receptor-associated protein 31-like
    Computational Description
    B-cell receptor-associated protein 31-like ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated protein 31-like (TAIR:AT3G07190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR