K34925

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34925

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34925

Determination of introduced cDNA(s)

  • J023057E15 - Rice Full-length cDNAs - Original: J023057E15

    full reading [+] show sequence

    Nucleotide sequence: J023057E15 - full reading 
    GACAGCTCTC TCTCAATCGC TCCCTGAGCT AGAGCTGTCC CTGCCAAAGG 
    CAAATAATAC CAGATGAACA CGGCAGCCTC TCGATCTCGA CAACTCGGGG 
    CGGAATAATT CTGGTGTTCT TCTCATCACC GATCGTTTCT GTACATGTAA 
    CAAGTTGAGG ATCGTGGCGC CTGCATGCAT TTGGTGGACG CCACGTCAAG 
    AATAACCGAG GTTACAGGTG TCTCCCCCTG CATGCAGCAG GGGGCATCTG 
    CAGCTTGCGG AACTCGGATG GTTTGAGTTT GAACGAGTTG CAGCATGTCC 
    CCCATGGAGT CCCGTCCTGA TGATCTTGTT CCTCCCGCGA TGCACAAGCC 
    GGCGATCCAA TGCGCCGCCG CCGAGGACGC GAGCCTGCTG CGAAGCCCGA 
    CGGTGTCGTC GGAGGAGTTC ATACAGTTCA AGAGGAAAGC CACGACGATC 
    TTGGAGGAGT ACTTCTCCAC GGACGACGTC GCGGCGACGG CGAACGAGCT 
    GAGGGAGCTG CGCGTGCCGT GCTACCACTA CTACTTCGTC AAGAAGCTGG 
    TCTCGGTGGC CATGGACCGC CACGACAGGG AGAAGGAGAT GGCGGCCGTG 
    CTGCTGTCCT CGCTGTACGG CGACGTCATC GACCGGCCGC AGGTGTACAA 
    GGGGTTCGGC AAGCTCGCCG AGTCCTGCGA CGACCTGTCC GTCGACACGC 
    CCGACGCCGT CGACATCCTC GCCGTGTTCG TCGCCCGCGC CATCATCGAC 
    GACATACTCC CGCCGGCGTT CCTGGCCAAG CAGCTGACGT GCCTGCCGGA 
    GGGATGCAAG GGCGCCGAGG TTCTTCACAG GGCGGAGAAA AGCTACCTGT 
    CCGTGCCGCA CCACGGCGAG ATCATCCTGC AGAGGTGGGG CGGGAGCAAG 
    AGCATCACGG TGGAGGAGGC CAAGGCCAAG ATCGCTGACA TCCTCGAGGA 
    GTACCTCGCC GCCGGCGACA TCGGAGAGGC TTGCCGGTGC ATCAGGGGCC 
    TCAAGATCTC TTTCTTCCAC CACGACATCG TCAAGCGCGC CCTCACCCTC 
    GCCATGGAGC GCGGAGGCGG CGCCGAGGGG CACATCCTGG ATCTCCTCAA 
    GTCGGCGTCC GACGAAGGCA TCATCAACGA GAGCCAGATC ACCAAAGGGT 
    TCAACCGCCT CATCGATTCC GTCGACGATC TGACGCTCGA CGTGCCAAAC 
    GCGAGGCGCC TCCTGAAATC GATGATCCTG AAGGCCTCGT CGGAGGGATG 
    GCTCTGCGCG TCGTCGCTGA AGCCGCTGGG CCCCGAGCCG AAGAAGGCCG 
    TCGTCGAGGA CGACGCTGCG GTGCGGCAGT TCAAGGCGAA GACATTGTCG 
    ATCATAAAGG AGTACTTCTT GACAGGGGAC ATCATCGAGG TGATGAGCAG 
    CCTGGAGGCC GAGAACTACG CGTGTTCCTC CTCCTACAAC GCCATCTTCG 
    TCAAGAAGCT GATCACCTCC GCGATGGACC GGAAGAGCCG CGAGAAGGAG 
    ATGGCGTCCG TGCTGCTGTC CTCGCTCGGA ATGCCGCCGG AGGACGTCGT 
    GTCGGGGTTC CACCTCCTGA TCGAGTCCGC CGAGGACGCC GCGCTGGACA 
    ACCCCGCCAT CGTCGAGGAC CTGACCATGT TCTTCGCCAG GTCAGTGGTC 
    GACGAGGTGA TCGCGCCATC GAACCTAGAG AAAATGGAGG AGGAGGCCGG 
    CCGCGGCAAG CCAGGGGGAT CCTCCACCGG CTTATTGGCG CTCCGGAACG 
    CCCGTGCCCT GCTCGGCGCG AAGCTCTCTG CGGAGCGGAT ACTGCGTTGC 
    TGGGGCGGCG GCGCCACCGG CAAGGCCGGG TGGGAGCTGG ACGACGTGAA 
    GGACAAGATC GGCAGGCTGC TGCAGGAGTA CGACTGCGGC GGCGACATCC 
    GGGAGGCGTG CCAGTGCATC AAGGAGCTCG GGATGCCATT CTTCCACCAC 
    GAGGTGGTGA AGAAGGCGCT GGTGGCGATC ATGGAGAAGC GTGGCAAGGA 
    CGAGCGGCTG TGGGGCCTCC TCGCCGAGTG CTACGGCCGC GGCCTCATCA 
    CGCCGAACCA GATGACCAAG GGCTTCGAGC GGGTGGCCGG CTGCGTCGAC 
    GACCTCGCGC TCGACGTGCC GGACGCCGGC AAGCAGTTAT GCTGCTACGT 
    CGAGCGCGCC AAGAAGGGTG GATGGCTGGA CGCGTCCTTC CCCAACGGTG 
    TGCGCTCGTG AAGAACACCC GGTTAATTTA TATACATGCA GATGCAGCAC 
    TGGCATTCCA GGGGATTTCA TTTGCAACTT TACACAGCTA TATACTACTT 
    TGCATTCCGT TCCATGTATG TATCAGCAAA GGGAATATGA CTAGCACAAG 
    AAAGAAAATT GTTGTCATAG GATTAGGAAG CTTTGATCTT CCATTTTAGC 
    AGTTGCGCGG CGTTTAGCCC GGAGGATTTG TGCATTGAAG AGTTTGTGTT 
    GTTTTTAATA TGATGTGAGA GTTTCTGTTG TTTTTGTTTT GTGAATTGGC 
    TGCTGAGAGA ATTACCATGC TACACCTTGT TATCTTATCA CATCCTATAT 
    ATCTATAAAG TTTATCTCCA CTAAATGTAG TTAATGCT

    Gene models with high sequence identity

    1. AT1G22730.1 [+] show detail - MA3 domain-containing protein
      E-value: 0; Score: 670.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Initiation factor eIF-4 gamma, MA3 23.328
    ProfileScan Initiation factor eIF-4 gamma, MA3 23.836
    ProfileScan Initiation factor eIF-4 gamma, MA3 18.559
    ProfileScan Initiation factor eIF-4 gamma, MA3 24.032
    HMMSmart Initiation factor eIF-4 gamma, MA3 1.4e-38
    HMMSmart Initiation factor eIF-4 gamma, MA3 2e-29
    HMMSmart Initiation factor eIF-4 gamma, MA3 1.4e-24
    HMMSmart Initiation factor eIF-4 gamma, MA3 3.3e-25
    HMMPfam Initiation factor eIF-4 gamma, MA3 1.1e-29
    HMMPfam Initiation factor eIF-4 gamma, MA3 1.1e-26
    HMMPfam Initiation factor eIF-4 gamma, MA3 1.8e-19
    HMMPfam Initiation factor eIF-4 gamma, MA3 2.5e-27
    HMMPanther PROGRAMMED CELL DEATH 4 1.6e-171

    See the detailed result >

    AT1G22730.1

    Model type
    Protein coding
    Short Description
    MA3 domain-containing protein
    Computational Description
    MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 2025 Blast hits to 776 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1297; Fungi - 8; Plants - 551; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR