K34539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34539

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Original: K34539

Determination of introduced cDNA(s)

  • J013145J01 - Rice Full-length cDNAs - Original: J013145J01

    full reading [+] show sequence

    Nucleotide sequence: J013145J01 - full reading 
    GATCGACTCG ACGACGACGA CGCATTCCGA ATTATTCAAG AAATTCAAGA 
    AGTGAACAGA GGAGGAAAGG AAACATGGCT TCGTTTGCAT CCACGGCGGC 
    GCCTTGGGGA TGCGTCGCCG GAGCTCGGCG TGGCGGCGGC GGCGGCGGGC 
    GGTGTGGGGT GCGCGCGTCC GCGGCGCTGG CGGTGGCGGC GCCGGCGGCG 
    AGGACGCACT ACGAGGTGCT CGGGGTCGGG GCGGGCGCGA GCAGGGGGGA 
    GATCAAGGCG GCGTACCGGC GTCTGGCGAG GGAGGTGCAC CCGGACGCCG 
    GCGCCACGGG GGACGAGGAC TTCATACGGC TCCACGCCGC GTACGCCACG 
    CTCGCCGACC CCGACGAGCG CGCGCGGTAC GACCGCGCCA TGGCCGGCCC 
    GGCGGCGTCG GCGTTCCGGC GGGCGCCCGC GTCGTCGTTC CGGCGGCGGA 
    CGTGGGAGAC GGACCAGTGC TGGTAGGGCA GAAGCACAAC TCCGGTGCTC 
    CCTGCCCTAC TGCGCCGCGC TCTCCGCCGC CGGAGCTCCG TCGGGCACGG 
    CGGTTTGCCG GCGAGTGACG TGGGATTCTG TCGGCCGTCG GATCCATCAT 
    AGAAGGCCCA GATCGAAGAG GAAAAGAGGA AGCGGAGCGA GATATTTGCA 
    GAGGAGCCCT CCATTTACCA TCTATTGTCA ACAAGGTCCT CCCGCGACCA 
    TCTCGGCCGT TCGATCGACT TGTGCGGCGC AGATTGAGCC AAAAAGAGAG 
    GCGCAGTGCG GATGTTTTCC TATGGGACCC TCAAGTATTC GGTATTATCA 
    AGCATACCCC CATCCCGCCG CCGGCGGCGG CGGCGGCGGA GCAAAGTGTT 
    GCCGCGCCGG CGAGTACTGC GGTGATCGCC GGCGTTTCGT GGGGATAACA 
    CCGCTAATGC ATGGTTCTTC TCCTGCAATC CTGTGTATAT GCTGTAACAC 
    GAAGAGAGGC AATTTTAGAG AACTCTTTTG TGTGCTGATT AGCTTGTTTA 
    TATAATAGGT TTTAGCTCTG TCTCTCTCAA CTGTAAATGA TCAAGAAACT 
    ATTGTTTCTT CTCTTTCCTT TTCAAATCAT CATCGTTGAG TACTAATTTG 
    AAGAACACTC GAATGTGTAT CTTTGGTGAT T

    Gene models with high sequence identity

    1. AT2G17880.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
      E-value: 4e-13; Score: 72.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Heat shock protein DnaJ, N-terminal 2.4e-16
    ProfileScan Heat shock protein DnaJ, N-terminal 17.254
    HMMSmart Heat shock protein DnaJ, N-terminal 2.2e-16
    HMMPfam Heat shock protein DnaJ, N-terminal 4.2e-18
    HMMPanther CHAPERONE PROTEIN DNAJ 1.5e-15
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.5e-15
    superfamily Heat shock protein DnaJ, N-terminal 9.3e-20
    FPrintScan Heat shock protein DnaJ 1.6e-09
    FPrintScan Heat shock protein DnaJ 1.6e-09
    PatternScan Heat shock protein DnaJ, conserved site 0

    See the detailed result >

    AT2G17880.1

    Model type
    Protein coding
    Short Description
    Chaperone DnaJ-domain superfamily protein
    Computational Description
    Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19677 Blast hits to 19677 proteins in 3133 species: Archae - 135; Bacteria - 8632; Metazoa - 3284; Fungi - 1660; Plants - 1836; Viruses - 5; Other Eukaryotes - 4125 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR