K33811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33811

Determination of introduced cDNA(s)

J013164F22 - Rice Full-length cDNAs - Original: J013164F22

full reading [+] show sequence

GTGAGACCAA CTACCAATCA ACCAACTAAC CGAACAGCGC GCGCAAGAGA 
TGAAGCGGAA AGCTAGCAGC AGCAGCAGCC CAGATTGCCC ACGACTCAAA 
CTCCCAATCC CCAACCAATC GCCTATAATC CTTAGTATAG TTAGTTTATT 
CCAACCCGAA TTCCAACCTC CCAAGAATTC AATCTCTTGT TCCGTTTCGC 
TTCTTTTAAT TCAAGATTGA ATCAATTACA TAGCGTGTTT GCTTGTCGTT 
GATGCTTTGC TTCCTGGAGG AGGAAACGCC CGCACACGCC GCCGACCACC 
TCTCCGTTTC CTTGGATCTT TCAGCTTCCT GTTCCTCACG AGATCGAGAA 
GGGGGGAAAA AGAAAACGTC GGTTTTTAGT CTCGTTTGCC TCGATCCTCT 
CGTTCTTGGT TGGTCGGCGC CATGAGTAAC ACCCTGCTTC GAATCTACCC 
TTCCGAGCTG AAGATACCCT TCGAGCTCAA GAGGCAGAAT TCGGGGATCC 
TGGAGCTCAC GAATAAGACC GATCATCATG TAGCCTTCAA GGTGAAAACG 
ACGAACCCTA GGAAGTACTC GGTGAGACCA ACCACCGGAA TCGTTCTGCC 
CAGAGGGTCT TGCGGAATCA CAAGTTCGTC TTGCTTCCTC TGCTGCTGTA 
CATTGCCCAA CTGATCAGTT CATCGTGTTT ATAAACGCAT TGCTGTTCTT 
GCTCTGAAAA ATCGTTGCAG TATCTATGCA ACCGCCGAAA GAGATCCCTA 
CGGATTATAA CTGCAAGGAC AAGTTTCTCA TCCAAAGCGT CGTGGTAGAG 
GATGGCACAA CGCAGAAGGA CATTCACAGT GACATGTTCA GTAAAGAGGC 
AGGCAAGGTG GTCGAGGAGT TCAAGCTGAG GGTGGTCTAC ATCCCTGCCA 
ATCCTCCCTC CCCTGTGCCA GAGGAAGAAG AGGATGAGAT TGATTCCCTT 
GATTCAGATG TGGACCATGA AGTGCAAATG CCATCTACGT TCGATGCTGC 
ATCAAGGAAG GGATATACAT CTGGATCGCA AGCTTCACAT GACGAGGGCG 
TCTCTTTGAC CAAAGCTGTA TTGAGTAAAT ATGTAGATGA AAACCAGAAG 
CTTCAACAAG AACTGGTATG GATTTTCTTT AGATAAGAAT TTGGAGAAAA 
TTGATACTTT CAATGTTTTA AAAAAGAACT GACCGTTTAA TTCGCTTCAA 
CTTCTCCATA ATTGAATAAT TGAGTGATTC GTATGAAATT ATTTTTTCTT 
GCTACCTTTA ATGAGGTTCA TATCATGATA TTTGTTACGA GACATTGCTC 
CCTTTCGATA GTTCTTTTTT ACTTAACCTT TTTTGCATAC AACATATCGT 
AAATTTACAA CATCTGCGTG CAAAAGCACC AGATCCACCA AAAGAAAAGA 
GAAGCAAGAC TAGGGCAGAT CAATTACTTA ACCCCAAGTT GATCTATTGC 
AGGATCTTCT TAAGAAGAAA AGGTCATCAT CCGATGGGGG TTTCACAGCT 
CTGTTTGTGC CTTTTGTCTT TGCGTTCTTC GTCTTCATTG GATACTTAAT 
GGCGGGAAGC AATGTTTAGC CAGAATAGCT GCAAAACATA CGCATCGTTT 
TGCAGAATTT TGTCCCTCTG GCTGATCAAT TCTTTCTGTT TCTCTTGGTA 
GAAATATATT TCTTCATTAT AGGTGGTTGT CTTCCGTTCT TGTGAAGTAT 
AATATACCTC TTAAAGAATG GGAGAGAACC ATTCATTGTA GATAGACAAA 
TAGGCGTTCT ATCTCTGAAT TGTTCATATA TAATAAACCT CTGGTTCATT 
ATACACACAC GTTTGCTTGT

Gene models with high sequence identity

AT4G00170.1 [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
E-value: 1e-38; Score: 84.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Major sperm protein	18.166
ProfileScan	Major sperm protein	10.647
superfamily	PapD-like	7e-18
superfamily	PapD-like	5.3e-09
HMMPfam	Major sperm protein	2.5e-18
HMMPanther	VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP)	3e-13
HMMPanther	VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP)	4.6e-13
Gene3D	PapD-like	4.9e-10

See the detailed result >

AT4G00170.1

Model type: Protein coding
Short Description: Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description: Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link: InterPro Scan - TAIR