K33416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33416

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33416

Determination of introduced cDNA(s)

  • J013132D22 - Rice Full-length cDNAs - Original: J013132D22

    full reading [+] show sequence

    Nucleotide sequence: J013132D22 - full reading 
    GGCCTCCCTC CCCTCTCCTC CCTCCTCCTT CCAAATCTGC AGCTCAAGCT 
    GGTGTTGGTG GTGTTGGTGG TGGTAGGCGG CGGCGTCGCC TTCTCCTCCT 
    CTTCTTGCTG ACCCCGCCTG ACTGGCTTCC TTCCCCTTCC ACACCTGCCG 
    GATCGGGTGG CTGGGTTGGT TGAGGGTCCA AGAAAGAAAG ATTTTGGGGG 
    TTCGGGGGTG AACCCCCCTC CCCATGCCCC AAGTGAGGAA CCAGAATCTG 
    GGCATGGTGG CTGACACGGA GAGCTCGGGG TCACTGGGTG GCAGCTCAAA 
    TGCTGCTTCT GACAAGGCTG TTGATGGGTC TCTTGACAAA AGATCTCAGG 
    AAAAGGCTCC AAAGAAAACT CATAAAGCTG AACGAGAGAA ACTTAAGCGT 
    GACCAGTTGA ATGACCTTTT TGTTGAGCTC AGCAGTATGC TTGATCCTGA 
    ACGACAAAAT AGTGGAAAGG CTACTGTGTT AGGTGATGCT GCACGAGTTC 
    TGCGGGATCT TGTTTCTCAA GTAGAATCTC TCAGAAAGGA ACAGTCCGCT 
    CTTCTAACTG AGCGTCAATA CGTTGGTTCA GAGAATAATG AGCTGCAAGA 
    AGAGAATATC ATGCTCAGAG CCCAAATATT AGAACTGCAT AATGAGATTT 
    GTGCAAGGAT GGGAAACAAC CGCCTCAATC AAAGCAATCT TGCGATGTCA 
    CAACCAGTAG CCAACAATGG CAGTAACTCA GCAACTCAAC CCGTTCCACA 
    TCACATATGG GGCAATGGTC CGAATTTAGC TATGGTGCAC CCAACAAACA 
    CATTATCTCC GTTGCACAAT CAGCACCATC AGTCTGCTGG TGCCAGCCAG 
    GTTTATGCGT CACGGCCTCA GGAGCTGCAG CTCTTTCCAG GGACCTCAGT 
    ATCAACAGAG CGAGAACGAT CCCGAGCTGG AAGTGGAAGC ACCCCGGCTA 
    CTTCTTCAGG CCTGACGGAT TCTTTGCCAG GGCAGCTTCG CCTCAGCCTC 
    CCGCAATCTT CTCAAGAAGA AAACAGCAGC GGCAGCAAGA AAGGTCGAAA 
    AAAGGGCTAG CCGGCCAGTT GACACTTGAC AGTTGCTAAA AAAGAATCGA 
    TAAATCGATA CTTGGTGAAT GGTGATAGTT ACACACTCCT GTAAATACTG 
    CGAAGCGCTT ACTGATACCT ACTGTGATAG TTGCCCTCTG TTGTAATTTG 
    TATTTGTAGT GCTTGCTCTG AAACTTAGAT CACGTTTGAC TATAGTTTTC 
    CACTTCCAGT CCTTTTACGG ATATATGTTG CCATATTACA GAGTTGTTTA 
    CCAGGAAGAG AGAAAAATGA TGCAATTCGA TAGCAGTGTT AACTGATGAT 
    AATTATATGA TCCCTGTCAC CAAGTCATGA AAATCTGATC TTGTATGTTC 
    ATGGGCAGCT TGTTTCAGCA TTACAAGTTG AAGAAATATT TGTAATCTGT 
    TGCAAACTGC ATGTTTATGG CTATGAGAAA TGATC

    Gene models with high sequence identity

    1. AT3G47640.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 4e-25; Score: 113.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Helix-loop-helix DNA-binding domain 0.0025
    superfamily Helix-loop-helix DNA-binding 1.7e-10
    ProfileScan Helix-loop-helix DNA-binding domain 8.041
    Gene3D Helix-loop-helix DNA-binding 9.7e-05
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT3G47640.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.
    Computational Description
    POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
    Link
    InterPro Scan - TAIR