K33341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33341

Determination of introduced cDNA(s)

  • J023107E20 - Rice Full-length cDNAs - Original: J023107E20

    full reading [+] show sequence

    Nucleotide sequence: J023107E20 - full reading 
    GGTGTGAGCG CGGGAGCACC TCTCCCGACG AGCCTTCCCT TCTCCTCCTC 
    GCCTTCGCGT CAGCCCGGCA TGGGGTTCCC GGTCTGCTGC TACTCCGAGC 
    TGCTGCTCCC CAAGCAGCTG CTCCACCTCC TCCTGCTGCT CGGCTACATC 
    CGCCGCTTCC TCCTCTGGGC GTTCCACGCC GTCGGCCTCG GGGACCTGCT 
    GGATCTCGGG GACGAGCAGC AGGCGGTGCT GCAGGACCAC GCGCGCGAGC 
    ACCGCGCGCC GGCGCAGGCG CTGCCGCCAC AGCAGCAGCA CCGCCGCGCC 
    GAGTTCCGGA CGGTGCCGGC GATGGTCATC GAGGAGGTTC TGCCGGTGGT 
    GCGGTTCGAC GAGCTGGTGG CCGCGGCCCC GGCGGTTTGC GGCGGCGGGG 
    ACTGCGCGGT GTGCCTCAGC GGCATCGGCG GCGGCGACGA GGTGCGCAGG 
    CTCAGCAATT GCCGCCACGT GTTCCACCGG GGCTGCCTGG ACCGCTGGAT 
    GGAGCACGAC GACCAGCGCA CCTGCCCGCT CTGCCGCGCG CCGCTCATCC 
    CCGACGAGAT GGCCAGCGCG CTCTGGGCCG CCGCCGGCGT GCCCGACGCC 
    TCCGACTTCG ACTTCTCCTA CTTCGGCGCG CCCCTCACGC CGATGCCCAC 
    GCCGACTCTG CTACGGCCGC ACGAGCTGCT GCTCACTGGC CTTGGCGGCT 
    ACCAGTAACC AGTGAACCGC CGCTGTTGGT TCACGGAGTT GGCAATATCC 
    ACCTACTGCA CAGCAGGGCA CCGGCGACCC GGAATGCGCA GTTTTTACAA 
    CGACTGAATT GGTCGTCGTG TTCGGGGAAG ACCAAGAACA GGAGGCGCCT 
    TCAACTGTAC ATAGGCAAAA ATGAGTAAAG CAAACCCCCC GAAAAAGGCT 
    AGATGATTAG TAGATTTTTA TTTTTGTTTT TGTTTTTGTA CAGAAGATTC 
    CATCTTCCAG GTTTGAGAAG TAGTGAATCT TTGTGCTGAT T

    Gene models with high sequence identity

    1. AT3G61460.1 [+] show detail - brassinosteroid-responsive RING-H2
      E-value: 3e-24; Score: 109.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 2.4e-15
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 5.4e-11
    ProfileScan Zinc finger, RING-type 12.622
    Gene3D no description 2.2e-11
    HMMPfam Zinc finger, C3HC4 RING-type 1e-08
    HMMSmart Zinc finger, RING-CH-type 0.0016
    HMMSmart Zinc finger, RING-type 5.2e-07

    See the detailed result >

    AT3G61460.1

    Model type
    Protein coding
    Short Description
    brassinosteroid-responsive RING-H2
    Curator Summary
    Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
    Computational Description
    brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR