K32905

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32905

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32905

Determination of introduced cDNA(s)

  • J023092B19 - Rice Full-length cDNAs - Original: J023092B19

    full reading [+] show sequence

    Nucleotide sequence: J023092B19 - full reading 
    GTGAGCAGCA AGTGGTGGGA GGGAGAATCC GGAATCCCAA AGCAACAGCA 
    GCTAGGGTGA AGGGAGGGAG GGAGGGGGAG AGGGAGAACC GCGGCGATGT 
    CGTCGTGGAA CTCGGTGGGG ATGGAGGTGC TGTACCAGGT GCTCGGGTGG 
    GTCGCCTTCT TCGCTTGGTC CTTCAGCTTC TACCCGCAGG TCTTCCTCAA 
    CTTCAAGCGC AAGAGTGTGG TGGGTCTGAA CTTTGATTTT CTGGTGTTGA 
    ACTTGACAAA GCACTCATCC AACCTCATAT ACAATGCTGC TCTATTCTTC 
    AGCCCCTTCA TCCAGAGACA GTATCATGAG ACATATGGTG ATAAAGAGAT 
    GATTCCTGTC GCGGCAAATG ATGTTGCCTT TTCTGTACAC GCGGTTGCCT 
    TGACAGCTTT TACCCTTTTT CAAGTATTCA TCTACGAGCG AGGAAACCAG 
    AAAATCTCCA AAGTCTGCAT ATCAATCACT GCTATTGTGT GGACAGCTGC 
    TATTGTTTGC CTTATTGTAG CTTGGCCAAA AAGTAACTGG CTCTGGCTTA 
    TAGATGTGTT CAATTCAATA CAGGTTGGGA TGACAGCAAT CAAATACATT 
    CCTCAGGCCA TCATGAACTT CAGGAGGAAG AGTACAATTG GTTGGAGTAT 
    TGGCAATATT TTACTTGATC TTACAGGAGG GGTGCTAAAC TTTGGCCAGA 
    TGGGTGTGCA ATCAATAGAT CAACACACGC TAGTGAACTT CTATGGAAAT 
    ATTGGGAAAA CCCTTCTTTC ATTGGAAGTC GTTTTCTTCG ACATCTTATT 
    CATAATCCAA CACTATGTGC TGTACCCTGT CAAACGAGAT GAGAATGCAG 
    CCAATGGCTA TCCAATTCTC CCCATCGAAG CAAAACACGT GGCGGCAGCA 
    TAAAACTTTA AGCTGGAGAA GATGGGCCCT GTTGCCATTA GGTGGGCCGA 
    GAAAAGGGCC CAGACTATTT AGAAATGCTC CAAGCCCATC CAAAGAAGCG 
    TAAAATCTCT TTGGCAAGAA TTTGGCTTTG TACATCATCC AAGATGGATA 
    ACGAAGATCA GATGTATCGA GATGGAATTG TCCTAGTTTA TTTTCATCAA 
    TGTAAGCAAA AATGTATCAT GGAATATTTT TTAGTCAATT TAAGTATTCT 
    TCTAGTC

    Gene models with high sequence identity

    1. AT5G40670.1 [+] show detail - PQ-loop repeat family protein / transmembrane family protein
      E-value: 8e-102; Score: 367.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Cystinosin/ERS1p repeat 7.5e-05
    HMMSmart Cystinosin/ERS1p repeat 1.9e-10
    HMMPanther CYSTINOSIN 5.9e-91
    HMMPfam PQ-loop 1.9e-17
    HMMPfam PQ-loop 3.8e-16

    See the detailed result >

    AT5G40670.1

    Model type
    Protein coding
    Short Description
    PQ-loop repeat family protein / transmembrane family protein
    Computational Description
    PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR