K32542

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32542

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32542

Determination of introduced cDNA(s)

  • J023076B14 - Rice Full-length cDNAs - Original: J023076B14

    full reading [+] show sequence

    Nucleotide sequence: J023076B14 - full reading 
    GAATCGATCA CTCCACTGGT GAGTAGTGAG TGGCTAGTGA CTGGTCAGTT 
    CATCACTTGT GAAGGTTTTG CAATCAGGAA AAGTTCAGAA GATCATGGGC 
    AAGCTCTGGA CAATCCTCAC TCACGTTCAT TCCCTTGCAG GGCCTACCGT 
    CATGCTCCTG TACCCCTTGT ATGCGTCGGT GCAGGCCATG GAGAGCCCAT 
    CGAAGCTTGA CGACGAGCAG TGGCTGGCCT ACTGGATCCT CTACTCCTTC 
    ATCACCCTCG TGGAGATGCT TCTCGAGTCC CTCATCTACT GGATACCGAT 
    CTGGTACGAG CTGAAGCTGC TGTTCATCGC GTGGCTGGCG CTGCCCAACT 
    TCAGGGGAGC CGCGTTCATC TACAACAGGT TCGTCAGGGA GCAGCTCAGG 
    AAGCATGGCC TCGCCGGCGC CGGCGCCGGC GCCGCCGCCA GCGTCGGCAA 
    GAAGGACAAG TCGTCGCCGT CGTCGTCACC CAAGGACAAG GAGAAGACCA 
    AGAGCAAGTT CCTCTCCTTC GTCACTCCCA AGAAGGATCA TGAAGCTTAC 
    TGAGCCAAGA AGTGCTGATC AGTCGGATCC CTGAAGATAG TTTTTTAGTG 
    TGTGTACTGT TCCATTTGTG TTTGTCCCTC TTCCTCTCCT TCAGAAGAGG 
    CAGCTAGCTA GCTTCATGTT TGGCTGGTCT TTTTGGCCAT CTGTGCATGT 
    CTGTAAACTT TATTGGAGTG AGGGGAAAAA AGAGCATAAT TAGTTGCTCC 
    ATGTTGAGTT GTTAGAGTGG TTTCTTGTAA ATGTAATTCA GGATCTCAGA 
    TGAGCAGACA ATAAAAACAC ACTGTTCC

    Gene models with high sequence identity

    1. AT5G50720.1 [+] show detail - HVA22 homologue E
      E-value: 2e-43; Score: 172.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 5.6e-32
    HMMPanther HVA22-LIKE PROTEIN 1.4e-51
    HMMPanther TB2/DP1/HVA22 related protein 1.4e-51

    See the detailed result >

    AT5G50720.1

    Model type
    Protein coding
    Short Description
    HVA22 homologue E
    Curator Summary
    Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.
    Computational Description
    HVA22 homologue E (HVA22E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue D (TAIR:AT4G24960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR