K32440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32440

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32440

Determination of introduced cDNA(s)

  • J033037L18 - Rice Full-length cDNAs - Original: J033037L18

    full reading [+] show sequence

    Nucleotide sequence: J033037L18 - full reading
    GATTATTGGT GTGTCTATGG GTTTACCAGG TTCCCATTGA TAGTGTGCAA 
    ACCACGGCGC ACACTCTGGC CGGTCGTCAG TTCAACCACC CGCCAACTGT
    TCGATCAAAT GCCTCCAGGG CGTCTACTTT GCCATTGCAA TTCCCATCTG
    CGAGAAAAGC TTCGGCGAGC AAACACAGGT CTTGCATTTG AAAATATCTG
    AACTGAGAGA TCGAGCACTG AATGGCAGAG TCTGTGGTGT TTGGAATCCT
    ATGCAAAATT GGATCAATAT TGGGGTCACA TCTGACGCAG GCATTAGTTT
    CACATCTGGG GAAGGAGGTA TCAGTTTTAA TTGAGGTTGA AAGCATTGTA
    AAGCAAATTA GAAGTGAGTT TAGGTTGATG CAATCTTTCC TGCAAGATGG
    CCAAGAAAAA GAAAGCTCCA GCAGGCAGGC TGAAACCTTT CTGCAGGAAG
    TTCAGCAGAT AGCATTTGAA GTTGAAGACA TCCTGGATGA ATTTGTCTAT
    TATTTTGGCA GAAAAGAAAC CCCATCTGTG GAATTGTTGA AGAACTTCTT
    CAGAAAATCT GAAAGTGTGA TGCCATTGCG CAGAATAGCA GCAGAACTCA
    AAGAAGTGCA GAATCGTCTC CAAAATATTC GAAACTTGAA ACTTCAGTAC
    AATATTGACT TATCTGAAGA AAGTGCCAGC TCCATCAGGT ATGAAGATAG
    CAAAGGTCAC ACACTCCACC ACATAATGCA TAATAAGAAA CTTGTCGGTT
    TTGTAAATGA GCGACAGAAG CTGCAAGAGT TGCTAATGGC AAATGAAAGA
    TCATGCTCAA TAATTTCCAT ATGGGGTATG GGAGGTTCCG GTAAAACTAC
    TCTTGTCAAA ACTGTTTCCG AAAGCAAAGC TAGCAAGAAC CGTTTTGATT
    GCCAGATCTG GGTTACCGTG TCTCAAACAT ATGACATTAC TGAAATAATG
    AGGAAGATTA TACAGTGTGC ATTGAAGGAT ACATGCTCAG CTGACTTAGG
    AAGCATGAGT AGTGAAGGCG TAGTGCTGAT GCTCCAGGAG ACTTTGCAGG
    GAAGGACATA CATGATGGTC TTGGATGATG TGTGGGATAC AAATGTTTGG
    TTCAGCTTGG AAGGCTTTCT AGATGAAAGC AGCATCAGAA GTAAGGTGGT
    AATTACTACT CGCATAAATG ATGTTGCTTC TTTGGCAGAA GACAAGCGCC
    GTCTTCAACT ACGAGGATTA GATGAGGCAG AGTCTTGGGA CCTCTTTTGC
    ATGTGGGCTT TCCGGCACGG TGAAGATCAA ACATGTCCTC CTGCAATGGA
    CCGAGTAGCA AGACAGATTG TTGGCAGGTG TGAAGGTCTA CCGTTGGCTA
    TAACGGCAGT AGGCAACTTG CTATCCTTCA AACGGCTGGA TTTGGTGGAG
    TGGGAGAAAT TCTATAATCA ACTGAACTGG GAGTTGCACA ATCGCTTGGA
    TAACCAAGGA CTCAGCATGG TGACTCGACT CCTTGGTTTA AGCTACAAGC
    ATCTACCGGT CCACTTGAAG AACTGTTTCC TTTTATGCAG TATCTTCCCA
    GAGGACTATA TGATACGCGG GAAGCGGCTA TGTAAACTAT TAGTAGTAGA
    AGGTCTTGTT GAACCAAGAA AAAACATGAC ACTGGAGGAG ATTGCAATGG
    AGTACATAGA AAAGCTAGTA GATCGCTGCC TGCTTCAAGT TGCTCGGAGA
    AATAAGCTTG GAAGAGTATG GGAACTCCAG ATGCATGACA TTATCAGGGA
    GCTGGCAATT TCAATATCCG AAAAGGAAGG ATTCTGCATG ATACATAATA
    AAGCTCAGAG ATCGGTGGTT GAGTGCGAGC CTCGTCGGTT ATCAATTCAT
    GAGAATTCAG TCAGAGTCCA GCTAAGTATA AATGCTTCAC GTGTTCGTTC
    TTTCTATCAA TTTGATATCG ATTGTTCCTC CGTGTCAAAA GTGCAATGGG
    TATAAGGACT GCTAGGTACC TGAAGGTTCT GGAACTAGGT AGTGTTCCAA
    TCAGAAAACT GCCGAGAGAC ATTGGGAACT TGTTCAATTT ACATTATTTA
    GGATTAAGAC GAACCAAGAT CAAGCAACTT CCTGAATCGA TTGACAGGCT
    CCAAAATCTC CGAACTTTGG ACATCTTCCT TACTGAAATA GCAAGTCTTC
    CACGTGGCGT AACCAGGCTA AGGATGCTAC GCCATCTGAT TGCTGGAAAG
    GCTGTTGCTT CTTATTTTGG CCTCGAAGAT GTCTTCACAG GTGTCAAAGT
    CCCCAATGGA TTATGGCGAT CACTGGATCT AAATGTCCTC ACAGGCATTT
    CTGCAAGCAG CAATTTGGTG GAACAATTGG CCAGCTTTAC ACAGCTGAGA
    TCATTGAAGT TGACAGACGT AAAAAATATC CACTATACAA AGCTATTTGC
    ATCCATCAGA AAGATGCAGC TTCTAAAGAA CCTTCTTATT GGAACTGCCA
    ATAGTGATGA GTATGTCAGC TTAGAAGCCC TAGATCCTGC ACCTCAGAAC
    CTTGAAATAC TCTTTGTGAA AGGTAGACTC CATGATAGGG TTATAGGCTC
    TGACCTATTT GAGGCAAATA GGCTAACCCT CATGGAGTTG ACTCTTGAAA
    ATAGCAGGCT GAGCATAGAT CCACTTCCAT CACTATCTAA TTTCTGTAAC
    CTGACCCTTC TTGGTCTGTT CAACCATTAT ATTGGAGAAA CCTTGCTCTT
    TCAGGCAGAG TGGTTTCCTA AGCTTCATAC ACTTACTTTG GCTGAGCTGC
    AAAATGTCAG TTCAATAGTG ATTGAAAAGC ATAGCATGCC AAATCTCTAT
    AACTTTGCTC TCATCTGCTT GACAAATTTA GAGGATTTGC CTGAGGGCAT
    GGAATTCCTT GGGTCTGTTG AAGAGCTCAG TTTGGTGGGC ATGCACCAAA
    AATTCATGGA ACATGTACAA GGTTCCTCAA ATGTAAAAGT CAAACACATT
    CCTGTAGTTG ACTACTTTGA TCAAACCAAA GGGAGGTGGG ATCGACTTTC
    TCCACTTTAT TTCGAAGACG AAGGCACTAA GAATTGAAAT TAAACACAAG
    CAAAGAAAAG ATGGATTACC TGCACTCCGA GCTTATCCTA TTCCCCACTC
    ATTTCTACTA GAGATCTTTC TACTATGTTC TCTCTATTGG CATCCAAAAA
    TATTTCTATG TATTTTGCCA CTCTTACATT AGTATCCTTT TGCCATCTCC
    ATTCGGTTGA TGATTGTTGA CTTCCATTGT TGGGCCCCAT CGTTTCGCTT
    TTTTTTCTAG TAAGCCAAAA CGGCTTATTA AAAAATAAAA ATGAATTTAT
    AGGT

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 5e-65; Score: 246.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Disease resistance protein 5.5e-15
    FPrintScan Disease resistance protein 5.5e-15
    FPrintScan Disease resistance protein 5.5e-15
    Coil coiled-coil 0
    superfamily L domain-like 2.1e-26
    superfamily P-loop containing nucleoside triphosphate hyd 1.2e-16
    HMMPfam NB-ARC 7.8e-74
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1, LRR 6.7e-08
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6.7e-08
    Gene3D no description 1.3e-07

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR