K32320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Original: K32320

Determination of introduced cDNA(s)

  • J023047P03 - Rice Full-length cDNAs - Original: J023047P03

    full reading [+] show sequence

    Nucleotide sequence: J023047P03 - full reading 
    TGTCTGTTCA TCAATCTACT GTACTGGCCT CCTTCTCAGC TCTCACTATT 
    CTGGCACCTA CAATTCCAAG CTTATCACGA CGATGGTGAA GGGAGGAAAG 
    CCGGTGATGC TGGTGGGGAT CGACGATAGC GACCATAGCT ACTACGCGCT 
    CGAGTGGACG CTCAAACACT TCTTCGCCCT GGGCCAGCCG CAACAGTACC 
    ACCTCGTCTT GCTCACCTCT AAGCCCCCCG CATCCGCCGT CATCGGCATT 
    GCCGGTCTAG GTACGACGGA GCTGTTGCCG ACTTTAGAAT TGGATCTGAA 
    GCGCGGTGCC GCCAGAGTAA TTGAGAAGGC AAAGGAGATG TGCTCCCAGG 
    TGATCGATGC GAGCTATGAG GTGTTAGAGG GAGACGCGAG GAACATCCTC 
    TGTGAGGCAG TTGAAAGGCA TCATGCAGAT ATGCTGGTTG TGGGCAGCCA 
    TGGCTATGGG GCATGGAAAA GGGCTGTTCT TGGGAGCGTG AGCGACTACT 
    GCAGCCATCA CGCGCACTGC ACCGTGATGA TCGTGAAGAG GCCCAAGCAT 
    AACACGCATA GCTGAAAAAC GGAATCGCAC TCGTCATCAA GAAGATCTAG 
    TGCCATTTCT ACATGTTTTC GAGTTCTAAT TTTATTTCTA AATTGTGTAT 
    TAGTTCGTGT GTGTGTGTGA ATAAATCGTG ACATAGAGTG ACCACCTTAT 
    TCTGCAATCT GCATATTGCA ATAGAATAAT TAATTTAGAA ATGCCTGATG 
    AGTTAGCCAT TTTAGTACTT GGATTTTCTC AGACGATGTG CAAGATGTCT 
    GAATTACTCC CTCTGTTAAA AAAAAAAATC CTAGGTGAAG ATGTGACTCC 
    TCCTTATACA ACGAATAAGA GTGGTCACTT CCTCTCCT

    Gene models with high sequence identity

    1. AT2G47710.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 4e-42; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Adenine nucleotide alpha hydrolases-like 5.4e-26
    HMMPfam UspA 6.1e-27
    FPrintScan Universal stress protein A 2e-13
    FPrintScan Universal stress protein A 2e-13
    FPrintScan Universal stress protein A 2e-13
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 8.4e-25

    See the detailed result >

    AT2G47710.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49050.1); Has 2830 Blast hits to 2747 proteins in 619 species: Archae - 112; Bacteria - 1833; Metazoa - 129; Fungi - 32; Plants - 667; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR