K32031

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32031

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32031

Determination of introduced cDNA(s)

  • J033082K05 - Rice Full-length cDNAs - Original: J033082K05

    full reading [+] show sequence

    Nucleotide sequence: J033082K05 - full reading 
    GTGAAAGAGA AGAGAGAGAG ATCCCCTCTC GCCTCGCCTC CTCCCTCCTG 
    CCTCCTCGAT CCCGATCTCT CCTCCTCCGC CGCCTCGCCG CCGCCGCCGT 
    GGACGCCTCA AGGGCTGATG GAAAATTTCT CCCCGAGAAC CCTGCTCAAT 
    AGTATCTTGC GTATCACTGT CTTAACCTCC GATGGCTCTA CTGCAAGGCC 
    CAAGCCCATT CAGAAGTACT GCCAAAATGT GTGTGATATC TCAAGCATTG 
    TGAGCCCTCT CATAGAGGAT CTATGTGAGT CTCCTGAAGA GCAACTCAAT 
    GAGGTGTTAA GGGAGCTTGG CACTGCTATT AACAGAGCTT CAGGGCTTAT 
    TGGGAACTGG CAACAGACAA CCAGCAAAAT ATATTTTATA TGGCAGATTG 
    AATCAGTAAT CTCAGATATC CAGGGATGTT CTCTACAGCT GTGCCAGCTT 
    GTTAACTCTC TATTACCTTC TTTGACTGGC CGTGCATGCA CATGTATTGA 
    GAAACTCCAA GACATAAATT ATGAAAACAT GTTTGATCTG GTAAAGGAGT 
    CTTCATTGGA GCTAGTTGAG ACGGACACAA CAAGTCCTGA GAATCTGTCG 
    AGACTATCTA GTTCATTGAG TTTGTCAACT AACCTGGAAT TTTACATGGA 
    AGCTGTTTCC CTTGAGAATC TCAGAGCAAG GGCAATGCGG AGTGAGAACC 
    GTGAAGAAAT GGATCTGGCT GACAAGATGA TCCCCCTGGT CAACTATATG 
    CATGACCACC TTCTGAGGGA AACACAACTG CTTAGCATCA ATGGGGTGCC 
    CATTCCTGCA GATTTTTGCT GCCCGCTGTC CCTAGAGCTG GTGTCAGATC 
    CTGTTATTGT AGCATCTGGT CAGACATATG AGCGGGTTTA TATCAAGTTA 
    TGGCTTGATG AGGGTTTTAC TATCTGCCCG AAGACACGCC AAAGACTTGG 
    TCACTCCAAT TTAATTCCAA ATTAAACCGT GAAAGCTTTG ATAGCTAATT 
    GGTGCGAATC ACACAACATT AGGCTTCCTG ATCCTATGAA ATCCTTGAAA 
    TTGAACTTCC CTTTGGCTGC GTCTGCTCTC CAGGATTCGA GCACCACAGG 
    AAGCAGCCCT CTACATCCTA CTGTCGCTGC TAAGGGTAAT ATTCCTGGGT 
    CCCCGGAAGC TGACCTTTAT ATGAGAAGCT TGAATAGAGC ATCTCCTCCA 
    CACAGTGTAG TCCATCAGAA TTCTCATGCG CATGTGAACC GTGCTGGTCA 
    TGAAGCCTCC ATTAAGCAAT CTTCAGAAAA TGCTAATGGT TCTGCATCAG 
    ATGTTTCAAG GTTATCTCTT GCAGGTTCTG AAACAAGAGA GTCTAGTCTG 
    GAAGAAAGAA ATGCTGGTTC TATCGGTCAA ACTTCAGAAC AGTCAATTGA 
    GGAAGCATTT CAAGCATCTA ATTTGGACAG GGATTCACAT GACCATGTGG 
    GTAGTTCTTC GGTGAATGGT AGCCTTCCAA ATAGCGGTCA ACTTGATGCA 
    GAATGTGACA ATGGGCCAAG CGAAAGGACA AATTACAGTA GTGATGCATC 
    TGGAGAAGTT ACAGATGGGC CTTCAGCATC TTCTGCTCCT CAGAGGGAGC 
    ATCTAATCCC TTCTAGATTG GCTGATGTTC GTAGTAGAGG CCAATTTGTT 
    CGGCGACCAT CTGAAAGGGG TTTCCCCAGA ATAATATCTT CCTCATCCAT 
    GGATACACGG AGTGATCTTT CCGCCATCGA GAATCAGGTC CGCAAGTTAG 
    TTGATGATTT AAGAAGTGAT TCTGTAGATG TTCAAAGATC AGCGACATCA 
    GATATCCGCC TTTTAGCTAA GCACAACATG GAGAACAGGA TCATCATTGC 
    AAACTGTGGA GCTATAAACT TGCTGGTTGG TCTTCTTCAT TCGCCAGATT 
    CCAAAACCCA AGAGCATGCC GTGACAGCCC TTCTGAATTT GTCAATCAAT 
    GATAATAATA AGATTGCCAT TGCAAATGCT GATGCTGTTG ACCCCCTCAT 
    CCATGTCCTT GAGACTGGGA ACCCTGAAGC CAAGGAGAAT TCAGCGGCTA 
    CATTATTCAG TCTCTCGGTT ATTGAAGAAA ACAAAGTGAG GATTGGAAGA 
    TCCGGTGCCA TCAAACCTCT CGTCGACCTA CTAGGAAATG GGACCCCTCG 
    AGGAAAGAAA GATGCAGCTA CTGCATTGTT TAATTTATCC ATATTACATG 
    AGAACAAGGC GCGTATTGTG CAGGCTGACG CTGTGAAGTA CCTAGTTGAA 
    CTTATGGACC CTGCTGCTGG AATGGTTGAC AAAGCTGTGG CTGTTTTGGC 
    AAACCTTGCT ACCATACCAG AAGGGAGGAC AGCAATTGGT CAAGCGCGTG 
    GTATTCCAGC CCTTGTTGAA GTTGTTGAAC TCGGTTCAGC AAGGGGGAAG 
    GAAAATGCGG CTGCAGCATT GCTTCAGCTA TGTACAAACA GCAGCAGATT 
    TTGCAGTATA GTTCTTCAAG AGGGTGCTGT GCCTCCTCTA GTTGCATTGT 
    CACAGTCAGG CACGCCACGG GCAAGAGAGA AGGCACAGGC TCTTCTCAGC 
    TACTTTCGCA GCCAAAGGCA CGGGAATTCA GCAAGGAGAT GACCTTCTCA 
    GAATTTTTTG TAGGTATACA TTAAGCATCT CCTCTGATTC CTTCAGGCAT 
    CGGCTTGGCT CCTCATATTG TTGTTGTTGG CTCTTGGGTG GCCCTATGTA 
    TTGTTTATAG TCAAATTGAG ATTGTGCTCA TGTCATACAA ATGTTGTGAG 
    CGATGGGTTG GGTGTTTGTT GTTGAGATGG TGTAACTTTT GGTTCTCTTT 
    TCTTTTTTGA AGGATATCTT TGTTCTTGTA TAGGTTGTCC ATTGGTAGCA 
    ACTTACCTAT TCAATGGGAT TTTGCTTTGT ATATGCTATT AACCCTGACA 
    TTATGATTGT TTTGAATGGT TGTAAAATTC GATATTGCCC TGCATGTTGT 
    ACC

    Gene models with high sequence identity

    1. AT2G23140.2 [+] show detail - RING/U-box superfamily protein with ARM repeat domain
      E-value: 0; Score: 632.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-17
    Gene3D Armadillo-like helical 7.2e-57
    HMMPanther CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN 5.5e-07
    HMMPanther TPR REPEAT CONTAINING PROTEIN 5.5e-07
    HMMPanther ANKYRIN-REPEAT-ARM DOMAIN PROTEIN 4.5e-23
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 4.5e-23
    HMMPfam U box domain 2e-14
    HMMPfam Armadillo 2.8e-09
    superfamily RING/U-box 9e-14
    superfamily Armadillo-type fold 5.4e-63
    HMMSmart U box domain 1.7e-15
    HMMSmart Armadillo 3.8e-05
    HMMSmart Armadillo 0.07
    HMMSmart Armadillo 0.15
    HMMSmart Armadillo 0.72
    HMMSmart Armadillo 2.1
    HMMSmart Armadillo 390
    ProfileScan Armadillo 12.372
    ProfileScan Armadillo 9.817
    ProfileScan Armadillo 8.802

    See the detailed result >

    AT2G23140.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein with ARM repeat domain
    Computational Description
    RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1).
    Link
    InterPro Scan - TAIR