K32004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32004

Determination of introduced cDNA(s)

  • J013111M06 - Rice Full-length cDNAs - Original: J013111M06

    full reading [+] show sequence

    Nucleotide sequence: J013111M06 - full reading 
    GAGTTGGTAA CCTTGTTTTC AATATTGCTC GGAACTCTTA AATTTTTTGA 
    CATGATCCTT CTCTTTAACT TTCCTCTGAT AATGCCTTTT CCTGCTCAGG 
    TCTTCTGACT GCTGTAAACA AGAACTACTT CCATGTCTTG AACTACCGGG 
    AGCTTCTCTT CAATGATTTT GGAGATAGAG TTGCACAGCT GTTGCATGTC 
    GAATCAGCCA TGCCTTTCTG GCAGAACCGA AGCAGCAGTT GCATCCAGCA 
    GCAGAGCCTC ATTGTGAACA CCCATTTGCT GTTCCCTCAT GACCACAGCC 
    TTTCAATAGT TCGGCTGAAG CAGGTCTATA AGATCCTTCA GTACATAGAA 
    GCTTATCAGG AAGAACATAA ACTTGGTCCA ATGCCAATCA TCCTATGTGG 
    TGACTGGAAT GGAAGTAAAC GTGGGCAAGT TTACAAGTTC CTCCGATCAC 
    AGGGCTTTGT TTCGTCATAT GACACTGCTC ATCAGTACAG TGATAGCGAA 
    GAAGATGCCC ACAAGTGGGT GAGTCATCGG AACCATAGAG GAAACATCTG 
    TGGTGTTGAT TTCATTTGGC TTCTAAATCC AAATAAGTCG AGGAAGCCCC 
    TGAAAACTAG CTGGAATGAA GCTGTCTTTG GTATCATCAA GTATCTTCTC 
    CTCCAAGTAG CGTCCCTTTC AGAGGAGAAT GCATTTGCAC TCCTCAAGGC 
    TGACAGTCCT GATGATCAGA TCACATATTC AAGCTTCTGC CAGGCACTTT 
    GTCAGTTAGG GATGGTCCAT CCTGATCGCC TAAACTCTGA AGAAATTAAA 
    GATCTGTGGA GTGAAGCTGA CCATGACGGG GATGATATTG TTGACTACAA 
    AGAATTTCAG CGGTGCATCT GGAGCCCTAC ATGCTGCAGC CAAGAGGAGG 
    AGGATGAGCG AAATCGACAT CTCCGATGGA AGCCTTGTCA CGTTTGAGGC 
    GAACGATGAA GCCTTTGGCT TTACTGTGAA GGAAGCTGTT CTCTTCCCCC 
    CAGAAGTAGA GAAGGGCATG TGGCCTGAGA ACTATAGCCT TTCAGATCAT 
    GCTCCCCTTA CTGTGGTATT CTCCCCTGTA AGAATGCCTT GTTCTCCACG 
    CACCCCTCGA ACCCCCTAGC CATCAATTGT CAATACTTGC GTGCATACAG 
    GAAAAAAGAA GCCTTGTACA GCATTAGGGT ATACTTTCAG AAATAGTGAG 
    ATATACAGCA GATCCAGAGT TTAGGTACAA AATGGAGTAA CATAGGGCGA 
    CTGAATAGTT TTCTTTCCTT TTTTTGTTTA TTCGTTCGCC TTGAGTTGCT 
    GTCTGTTGTA TGTATCTAAA CATGGTTCCA TGTTCATAAA TGTAAATTTT 
    GCTCTGTTTT TGTATGTATA TGATTAATTA CATTATGTC

    Gene models with high sequence identity

    1. AT5G54130.2 [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
      E-value: 3e-119; Score: 87.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily EF-hand 2.9e-09
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPfam Endonuclease/exonuclease/phosphatase 2.7e-06
    HMMPanther CARBON CATABOLITE REPRESSOR PROTEIN 4 1.5e-09

    See the detailed result >

    AT5G54130.2

    Model type
    Protein coding
    Short Description
    Calcium-binding endonuclease/exonuclease/phosphatase family
    Computational Description
    Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR