K31844

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31844

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31844

Determination of introduced cDNA(s)

  • J013149O08 - Rice Full-length cDNAs - Original: J013149O08

    full reading [+] show sequence

    Nucleotide sequence: J013149O08 - full reading 
    GTGAAGAACT CGCTCCTCGT CCTCATCCAG CACAACTGCG TGCAGGCCTT 
    CAATGCCCCC AGAGGAAATG GTGATAAGAC GGTAACGCAC TACCTGGCCA 
    TCTTCGACAA CATCGTGCAC AGACAGCGTT TCTCAAAGTT CCTTTCTATC 
    ATCCGTGCAG ACATCCCAGA GTCAGAAGCG CTGCTTGAAG GATTGCTTCA 
    GAATGGTAGG CTAACATTTG GCCAACTTGT GGAGCGAACA ATTTCTAAAG 
    TACCAGAAGG CAGTATCACA CCAGCAAGGG AGGAAATACG AATGAACTTC 
    AACAAACTTG TATTTGCACA TTATGTGGAG CGTTGCCCGA AACCTGAACC 
    TTTCTTTGAT CCACTTGTAG ATGAACAATC TACCTCGTCA AGGAAACGTG 
    CTCCAAAAAC TGTCGAGATT GCTCTTTCAA TTGATAAGAA AGTTGTCAAT 
    ACTGCAGCTC TTTCTGATGC AGAAAGATTT TCTGAGATCC CATACATCAT 
    GGAAGATGCA TCCAATGCTA ATGATTCTCC ACGTTCTTCT ATTTCTGGTG 
    CTAAGAGGAA ACATAATGCC TTAGAAGGAG ATGCAGAGCT CGATTCAACA 
    ATTGCAGAGA ACGAAGTACT TTGGCGGGCA AATTTTGAGA AATTCACATT 
    CTGTCTAAAG AAGAAGTTTT GTGCAGACCG AAAGAAACCT AAGTTGAAGG 
    TTGGCACACA TCCTATCTGG GAAGCATTTT TCGAGGCCAG TTTAATGGAA 
    AGGGACAACA ACTCTGTGAC ATCTCCAATA AATGGTATTA TGGAGAGGCT 
    AGGACAGAAG GAAGGAGGTA CATCGATGAC ACTTGATCAT ATAACAAGAG 
    TTTTGGAGGA GTTGAATTGT AGTCCTTCCT CAGAGGACCC AGATTCATTC 
    ATTTTGGATT TAAGCAGAAT TGTTGAAGCA TCTCGAAATG AGGAGATAGA 
    GTCGCTTGTG AGAAAGAAAT ACGGGCAAGA AGCTTTTACA ATTTTTAGGC 
    TATTGGTCAG AGAACGCGGT CCAGTTGAGA CAGATAAAAT TATTGACACA 
    ACAATTCTTG ACAAGCAGAT TGTTCATGGA ACTTTGTATA AGCTTTGGAA 
    GGACGACTAC ATCGATACAG AGAGAATCCT TTCTGGAACA GGAACAGGGA 
    ACACACAATA TTTTGTATGG AGAGTGAAAA ATACATTCCG GGAACAGTTC 
    ATCGATAATC TATGTCATGC TGCTTTAAAC CTGCGGCAAA TGGTCAATTA 
    CATAGCTGAA CTCCTACTCG AGGGCTCAAA GGATGACACA AAGTTGCGGA 
    ATAGAAAAAA TATTTTGATC TTAGCCCTGA CTAGACATGA CGATTCTCTC 
    ATGCTGTTTC AGGATTTTTG AAACGCTGTA GCAGGTGTTC CAGCATCTTT 
    CTTCCATACT TAATCATACT TCTTTTGAGC TAGATGGTGG AATATCATAG 
    TTTATTTTGC ACCCAGGCTT TTATTGGGTC AACTGGCTTA GGATTAACCA 
    ACGCTTTCCC TAGGCCAATC GAACCAACCT TTCCTTTTGG CATTTCGTTT 
    CAAACCAAAG TTCGGAAATG AAATCCTTTG GTATATTGGA CCCTTGTGAA 
    TTTTTGTCTT TTTGTGACTA ATTAAATTTT GGTAACGTCA CATTTCGATT

    Gene models with high sequence identity

    1. AT3G49000.1 [+] show detail - RNA polymerase III subunit RPC82 family protein
      E-value: 3e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily "Winged helix" DNA-binding domain 2.4e-06
    HMMPanther RNA POLYMERASE III (DNA DIRECTED)-RELATED 4.3e-17
    HMMPfam RNA polymerase III Rpc82, C -terminal 5.9e-30

    See the detailed result >

    AT3G49000.1

    Model type
    Protein coding
    Short Description
    RNA polymerase III subunit RPC82 family protein
    Computational Description
    RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 265 Blast hits to 257 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 106; Fungi - 69; Plants - 57; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR