K31635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31635

Determination of introduced cDNA(s)

  • J023041F15 - Rice Full-length cDNAs - Original: J023041F15

    full reading [+] show sequence

    Nucleotide sequence: J023041F15 - full reading 
    GAGGGTTTTT GAAGATCCTC GCCGTCGCCG CCATGTATGG GAACTCCGGC 
    GAGGGCCCCC CGTGAGGCGG CCGGACACCT TCCCTGCATC CTCCAGGACG 
    CGGTTAGCAG AGTCTCCACC GCCCAGATCC TCCACTCGTC CGGCTACACC 
    GCGGCGGAGC CAGCCGCCCT CCGCGCCCTC TCCGACATCG CCGGGCGCTA 
    CGTTGCCTCC CTGGGCCGCG CGGCCTCGGC CATCGCCGAG GCCCGCGGCC 
    GCACGGAGCC CAACCTCGCG GACCTCACCC TCGCGCTCGA GGACCACGCG 
    CTCGGCGGGT TCCCCGGCGC GTCCGACCCC GCCCGCCCCG TCCTCCGCTC 
    CGGCGCGCTC TCGGAGCTCG CTGGCTTCGT CCGCGTGGTG CGGGAGGTGC 
    CGTTCCCGAA GCCCGTGCCG CGGAGGGGAG GGGCCCCACG CGGCAAGGCG 
    TGGGAGAGCT TCGCGGCGGC GGGGAAGGAG CCTCCGCCGA AGCACGTGCC 
    GCGGTGGCTC CCGCGCTTTC CCGACAAGCC GGAGCCGGAG CCCGAACCAA 
    AGGCGGCGTA CGACGAGGCG ACGGCGAGGT GGGAGGCGCG CGTTCGCCAC 
    GAGGAGGAGG CGAATGCAGA AGAAGCGGTG GTATTGAAGC CGAGCGTTGA 
    TGGCGGCGGG GAGCGCAGGG GAGTAGTACC GGAGAAGAGG GGGAAAGTGA 
    GCTTCCGCGT GCGGGCGGAG AGGAAGAAGC GGCGGGTGGG ATTGGACCAG 
    CAGTGAGGCG GTGGCTTCGA ACGGTTCGCG GAGAATCGAG AAAAATCCGC 
    GGCAATAGTG CGGGCGGCGA GCAACTACCG CTCGGCCGTG GCCGTGGAGA 
    ATGGAGATGG ACGACACGCC GCGGCGTTGC CCGGTGACCC CTGTCCAGTC 
    GAGGGGTTGA AGAAGACTTG ACGAGTTTTG GGCTCTGCCT GGGCCACACG 
    TGGCGCCTAT AGGCTACTAG CCCACGAGCC ACCTGCCGTC GTGGCTGAAC 
    TGGCCGAAAA GGTCAAGTGT GTGGGTGATT GTACAAGTTG TAATTGAGTT 
    GCCACAGTTT ATCACAAATT TTGGCTTTAG TTTGTTCACG CGGCG

    Gene models with high sequence identity

    1. AT4G34340.1 [+] show detail - TBP-associated factor 8
      E-value: 8e-17; Score: 85.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Bromodomain transcription factor 5.9e-12
    HMMPfam Bromodomain transcription factor 1.5e-14

    See the detailed result >

    AT4G34340.1

    Model type
    Protein coding
    Short Description
    TBP-associated factor 8
    Computational Description
    TBP-associated factor 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565), Transcription factor TFIID, subunit 8, C-terminal (InterPro:IPR019473); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR