K31628

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31628

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31628

Determination of introduced cDNA(s)

  • J023130B22 - Rice Full-length cDNAs - Original: J023130B22

    full reading [+] show sequence

    Nucleotide sequence: J023130B22 - full reading
    GGAGGTTGGG CTAGGTGCGG TGCAGACGGT GTCGGGGGGT GCAGGGCAGG 
    CGCAAAAGGA ATTACGGAAT TGCCCCAACC AAGGAGGAGA CGGAGGGGAG
    GGCAAGAAGA AGAAGGACGG TGCAGAGGAA AGGAAAGGAT TGGAATTCCA
    GGGGCGACGA CATGGCCGCC GTGCAGGGGC AGGGGCAGGG GAAGCTCCTG
    TACATTGTGG TGGTCGACGA CGATGGCGCC ACCTTCCGCT ACACGCGCTC
    CCTCCTCCAC AGCACTCTGC AGCTGATGGG ATGCAAGCCG CGCCATGCCT
    TCGAGATCAG CGGCAGGGTG TTCGACGAGA TCCGAGGTCA CATGGGCGGT
    GACATGGCCA TGGGCGGCGG CGGTGGCGTG CAGCGCTACG AGCTGGCCGC
    CGACGCGGAA GCCGCCAGCC CCAGGCAGTT CCAGTTCGAG CTCTACAAGC
    GCCGCACCAC CCTTCTCATC CCTCGCCCGC TCTTCCTCCG CCTCGTCTGC
    CACGCCCTCG CCCTCTACAA GTATGTCGCC CCCGACCAGC GCTCTGATCT
    CCACCGAGCC TGCAGGATCC GGGAAAGGAA GGAATCAGTC ACCATTCTTC
    TCTGCGGAAC CAGCGGCTGC GGCAAGTCTA CTCTTTCCAC CTTGCTGGGG
    AGCAGATTAG GAATCACTAC TGTAGTCTCC ACCGATTCCA TTCGCCACAT
    GATGCGGAGC TTTGTTGAAG AGAAACCAAA TCCCCTTCTC TGGGCATTTA
    CCTATCATGC AGGCGAATGG CCTCGACCCA GTAGCGGTCG CTGATGGTAA
    AGGTAGGCGC AAGGCAAAAA AACGCTCAGG CATCTCAACG ACCTCAACCA
    TTGATTTTGA TAAAACCAGG CCTCTCAATG ACCAACCTGA CGGCAAACCA
    ATTGGGAAGA AGCAGATGGC CATAGAAGGC TACAAAGCCA CAAAGTGAGA
    TGGTCATTGA TAGTTTGGAT CGGTTGATTA CTGCCTGGGA GGATCGCAAG
    GAATCAGTTG TTGTTGAGGG TGTTCACCTA AGCCTTAATT TTGTGATGGG
    GCTAATGAGG AAACATCCTT CTATAATACC TTTTATGATC TACATATCCG
    ATGAGGGCAA GCACACCGAG AGGTTTGCCG TACGTGCAAA GTACATGACA
    CTTGACCCAA CAAAAAATAA GTACGTCAAA TACATCAGCA ACATTAGAAC
    TATCCAAGAG TACCTCTGCA GCCGAGCCGA CAAGTACCTA GTTCCCAAGG
    TGAACAACAC TAATGTTGAT CGGAGTGTGG CTTCTATCCA TGCCACTGTC
    TTTAGCTGCC TCCGTAGGAG AGCTGCTGGT GATCAGTTAT ATGACCCTGC
    TACAAACACA GTGGCAGTTG TAAACGAGGA ATACAAAAAC CAATGTGTGG
    CCAACTCCAT GAGTTCCAAG GGGATGTTCA AATTGATTCA AAGGTTAGGA
    TCCTCAAGAA AGCTCATGGC CATTGTCAAT GTGGATGGAT CTGTTTCAAA
    GGCTTGGCCG GTTGAGTCCA GCAGCGGGGA TGGAAAAGGC GGTTCGGAAA
    ATGGCAGTAA GAAATATGTA GGCGATCCAA TATACGGGCC TCTAAATATT
    GGAAGGGCAG AGTCAGTCAA TCTCCAGTTT GGCGCTTTCG GAATAAGTGC
    CTGGCCTACT GATGCAGGCT GTACAAGTCA AGCTGGAAGT GTCAACGAGT
    CATGGGACAA TGCTAATGAA GGCACTGGAA GCCATGTTCC TTCTTCTTCT
    GGTTCTCCTA AGAAGTTGGA TGGACATTGT AAAGAGATTA AAGAATCAGC
    AGCGGCATCT GGAAGTGATG ATGACGAAGA AGAAGAAGAA GAAGCGGCTG
    ATGTTCCACC TAATTCAGGG AGTGAGGAGG ACCTAAGTGA AGAAGACATA
    AGGGCGATCC ATGAGGAGAT GGAAGGTTCC GTCGATGAAG ATTGCAATAG
    GTCTGATGAG GAATATGATG ACCTGGCCAT GCGTGATTGC ATGGAGAATG
    GTTTTTTGAC CGACGATGGT GTTGTTCACA CCGTATTTGA TGGCAACGGA
    CAGAAGCACA GCACATTGAG AAAGCGTCAA GTTAATTTGC GTACCCTATC
    AAAGATCGAC TTAGACTCTC CTGACACTGC ACGCTCTTCT TCTGCTCTTC
    CTATTAGCGC AAGCAGCAAG CGAAATGGCA CAAGGAGGTG GAAGCGGTCC
    TTGAGTGAAT CATTTCGTTC ACGGCCACGG AGTGCTCCAT CTTTAGTGGA
    ATTGACGCCA AAGCACAAGG GCTCAGCCGT TCCAGAGGTG GCTCCCGACA
    AGTAGAACTG CATATAACCA GGGTATATCT GCCTAACTAG TGTTTTGCAG
    GAGGCCTAGA CTTAACAGAT GAATAACCGA TTTTTTTTTC TTTCTTTCTG
    GTCTTTAACC CTCATGCCTT TTTTTTCCTG GACTTGGAGA GGATGCAGAT
    AAAAATTCAC ACAGCGTGAT TCTTTTGGGA GTTATGTTTT CTGTTTGCAT
    ATGCCTAAGC TGTAAATGAT GAAAATACAG TATATGTACT GTCTGAACCC
    TCCGAGATGT AGAGAAGTTT GAGGCAATGT GTTGTTCTTA TCAATGCTGC

    Gene models with high sequence identity

    1. AT5G60760.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 1e-155; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 2.5e-07
    Coil coiled-coil 0

    See the detailed result >

    AT5G60760.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45090.1); Has 1216 Blast hits to 969 proteins in 195 species: Archae - 93; Bacteria - 85; Metazoa - 220; Fungi - 67; Plants - 127; Viruses - 43; Other Eukaryotes - 581 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR