K31314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31314

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31314

Determination of introduced cDNA(s)

  • J033107D08 - Rice Full-length cDNAs - Original: J033107D08

    full reading [+] show sequence

    Nucleotide sequence: J033107D08 - full reading 
    TGGTGGCTCG CTGGACACAA CACACACCCA CACCCACTCC CCCACTCTCT 
    CTCCGGTTCA TGTCCTGCTG CTCCCCATGT CGCCCCCACT CGAGCTCGAC 
    TACATAGGCC TCTCGCCGCC GGTGCCCGCC GCCGCCGATG CCGCCGCCGA 
    CAACGACCTG AAGGGCACCG AGCTCCGCCT CGGCCTGCCC GGCTCCCACT 
    CGCCGGACCG CTCCCCGCCC GCCGCCACGC TCGACCTTCT CCCCGCTGCC 
    AAGGGCGCCA AGCGCGGGTT CTCCGACGAG GCGCGTCCGC TGCCGGCGTC 
    CGCCGCCGCC GCCGCCGCCG CCGGGAAGGG CAAGAAGGCG GCGGCCGGCG 
    AGGAGGATGA GGATGCGGAG GAGGAGGACA AGAAGGTCGC CGCCGCGCCG 
    CAGGCGCCTG CTGCCAAGGC TCAGGTGGTT GGATGGCCAC CAATTCGCAG 
    CTACCGCAAG AACACGATGG CTACTAACCA GCTGAAGAGC AGCAAGGAGG 
    ATGCTGAAGC GAAGCAGGGC CAGGGGTTCC TGTACGTCAA GGTCAGCATG 
    GATGGTGCCC CCTACCTCAG GAAGGTGGAC CTCAAGACCT ACAAGAACTA 
    CAAGGACCTG TCAACTGCGC TTGAGAAGAT GTTCATTGGC TTCACAACTG 
    GCAAGGATGG CTTATCTGAG AGCCGCAAGG ATGGTGAATA TGTGCTGACT 
    TATGAAGACA AGGATGGAGA CTGGATGCTT GTTGGCGATG TTCCATGGGA 
    GATGTTTGCC AACTCTTGTC GCAGACTCAG GATCATGAAA GGTTCAGATG 
    CAATTGGACT TGCTCCAAGG GCAGTTGATA AGTCCAAAAA CCGCAACTAG 
    AATGGTTTCT GCCCCACAGT CAAAAGCAAG ATGGAGATCA AATGACTGTA 
    GGGAATTTTC TGAAAACCAA GAAGTCTAAC AGTTTTAAGA TGGAGTCTGC 
    CTTATGGTCT GTACTACATG GTTTGCTATT GTGAAAGTTA AAAAAAAAGG 
    TGTCTTGTTA TGTTAGCTTC GCCAAATCTC CTAGGGACAT AAACTCTATT 
    TGATTGTGCC CAAGTCTTTG TACGTGTGTT AATGCTATTC GTGTAAATGG 
    TTTGGACACC ATGTGCTACT GCTATGATTG AGCACCCCTA CCTACTTTGC

    Gene models with high sequence identity

    1. AT4G29080.1 [+] show detail - phytochrome-associated protein 2
      E-value: 9e-48; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily CAD & PB1 domains 1.8e-11
    ProfileScan Aux/IAA-ARF-dimerisation 33.374
    HMMPfam AUX_IAA 2.5e-75

    See the detailed result >

    AT4G29080.1

    Model type
    Protein coding
    Short Description
    phytochrome-associated protein 2
    Curator Summary
    phytochrome-associated protein 2 (PAP2)
    Computational Description
    phytochrome-associated protein 2 (PAP2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2237 Blast hits to 2234 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2235; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR