K31228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31228

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31228

Determination of introduced cDNA(s)

  • J033060B05 - Rice Full-length cDNAs - Original: J033060B05

    full reading [+] show sequence

    Nucleotide sequence: J033060B05 - full reading 
    GGTGGCCACT TTCCTCGGCC CATCGTGCCA TCCGTCTCTC TCACCGTCTC 
    CGTGCTCCTC CGCCGCCCAA GGGTGTCTCC GGCGACTCGC CCGGCGCCGC 
    ACGCGAAGCC CGGAGATCCG GCTGCGGCGG AGGCGAGAAG GAAGAGGGAG 
    ATGAGGGCCG TGGTGCAGCG TGTCCTCTCG GCAAGCGTCG AGGTGGAGGG 
    GCGGGTGGTG TCGGCGATTG GCCCCGGCCT CCTCGTCCTT GTCGGCGTCC 
    ACGAGGCCGA CACCGACGCC GACGCTGACT ACATTTGTCG GAAGGTTCTG 
    AACATGAGGC TATTTCCTAA TGAGAAGACT GAAAAGGCAT GGGATCAAAG 
    TGTTTTGCAG CGGAAATTTG AAGTTCTATT AGTCAGTCAA TTTACCTTAT 
    ATGGAATCCT GAAGGGTAAC AAGCCAGATT TTCATGTGGC TATGCCACCT 
    GCTAAAGCAA AGCCATTCTA TGCTTCTTTA GTCGAGAAGT TCCAGAAATC 
    ATACTCAGCT GATGCAGTGA AAGATGGCAT TTTTGGAGCA ATGATGAAGG 
    TTTCTTTAGT GAACGATGGC CCTGTAACAA TGCAAGTTGA CTCATCCTCA 
    TTGCAAAATC CTGCTCAGTC AAGCAATGGT GATGTTGGCT CAGTTGGGGA 
    CAATGAAGCA CAAGTACCTA AAGAGACTTC TTAATCTCTG TAACTGGTCT 
    TCTACCCTTC CTGCACGATT TGAACATGGT TATCGCTGTC CCACATCAAG 
    CCATGCAGAA TTTTGAGTTT GTTTTTGAGG TTTGAGCAGG AAGAAGCCCT 
    CCAGTGAGCT CGTGCCATGG GTGCTACAAG TCGTGTTTTC ATTTCTCCAC 
    TTAAATATTG ATTACTGGGG AAATATATTA GTATTCATTT CGTCTTCAAA 
    GACATGAATT TTATTACTGA TCTGTCATTC ATACACGAAT ATCAAATTGA 
    TTCAGTTGGC CTG

    Gene models with high sequence identity

    1. AT4G18460.1 [+] show detail - D-Tyr-tRNA(Tyr) deacylase family protein
      E-value: 2e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP D-tyrosyl-tRNA(Tyr) deacylase 27.423
    Gene3D D-tyrosyl-tRNA(Tyr) deacylase 3.5e-48
    HMMTigr D-tyrosyl-tRNA(Tyr) deacylase 5.8e-41
    HMMPanther HISTIDYL-TRNA SYNTHETASE-RELATED 1.2e-87
    HMMPanther D-tyrosyl-tRNA(Tyr) deacylase 1.2e-87
    superfamily D-tyrosyl-tRNA(Tyr) deacylase 2.3e-55
    HMMPfam D-tyrosyl-tRNA(Tyr) deacylase 2.5e-46

    See the detailed result >

    AT4G18460.1

    Model type
    Protein coding
    Short Description
    D-Tyr-tRNA(Tyr) deacylase family protein
    Computational Description
    D-Tyr-tRNA(Tyr) deacylase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: D-amino acid catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-tyrosyl-tRNA(Tyr) deacylase (InterPro:IPR003732); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR