K30817

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30817

Determination of introduced cDNA(s)

  • J023012N02 - Rice Full-length cDNAs - Original: J023012N02

    full reading [+] show sequence

    Nucleotide sequence: J023012N02 - full reading
    GAAATTCTCC GGCGTTTCCA GTTCAAAAAT AAAAAATAAA AAATCTCCGG 
    CGCAAATCCT CCTCTCCGCC GCCGCCGCCT CCACCTCCAC CGCTCGCCCC
    CTCGCCGCGC CTCCACTCCT CACACCACGC TCCTCCTGAC CTCCTCCCTC
    GCGCTTCTCC GGCGGCGCCT CGCTCCTCTG CGCGGACCGT TGCCCCTGGC
    CGAGCGCGGC GCGGCGCGGG CCGCCCGCGG GGGGATCGGG CTCGGGTAGA
    GGCGGGCGAC CTGGCGGGGG AAGTAAGGGG TCGCGCGTGG CGGGGAGATG
    ATCTACACGG CGATAGACAC GTTCTACCTG ACGGACGAGC AGCTGCGGGA
    CTCGCCGTCG AGGAAGGATG GGATCGACGA GGCCACCGAG ACCGCCCTCC
    GCGTCTACGG CTGCGACCTC ATCCAGGAGA GCGGCATCCT CCTCAAGCTA
    CCACAAGCAG TGATGGCCAC AGCACAAGTA TTGTTTCATC GTTTTTACTG
    CAAGAAATCA TTTGTTCGGT TTAGCGTTAA GAGAGTTGCT GCAAGCTGTG
    TTTGGCTGGC AGGGAAGTTG GAGGAGAGTC CAAGGAGATC AAAGCATATA
    ATCATTGTCT TCCATAGAAT GGAATGTAGG AGAGAGAACG TACCAATAGA
    ACACTTAGAT GTGTTTTCAA AGAAATACTC AGACTTGAAG CATGATCTGG
    TAAGGACAGA ACGCCATCTG CTGAAAGAGA TGGGGTTTAT TTGCCATGTA
    GAGCATCCTC ATAAGTTCAT ATCTAACTAC CTTGCAACAC TTGAAGCCCC
    CGAACTGACG CAAGAGGCAT GGAACCTTGC CAACGATAGC TTGCGGACAA
    CTCTATGTGT AAGATTCAAG AGTGAAGTTG TAGCATGTGG AGTTGTGTAT
    GCTGCAGCAA GGAGGCATGG CGTGCCCCTC CCTGAAGATC CTCCCTGGTG
    GAATGTGTTT GATGCTGATG AGGCAGGAAT TCAGGAAGTT TGCAGAGTTC
    TTGCTCATCT CTACAGCCTC CCCAAGTCAC AATATATACA AGTGTATAAG
    GACAATGATT CCTTCACGCA TAGGAGGACT TCTGATACAA ATGCTTCAAA
    GGAAAGTCCT GCAACGACTG TTGCAAGCGA TAAGGGTACC CCTGTACCGT
    CAAGTTCTAG CCAGGAAAAG GATGCACTGA TTAAGGCAGG GTCAGATAAG
    GTGAAAGAAA AAGGTGACGA TGATGGGAAG ACGTTACCTT CTGAACCCAA
    TGGTAAAGAA GGCCCTGCAG TGAATTTGAA TAGTGAGAAG TCAGAATCCA
    ATGTTGATCG CTCTCGGGAA AGAGAAAGAG ATAGATCAAG AGGGCGGGAC
    CGTGATAGCA GGGGCCGGGA CTCTGATCGT GATAGCAAGG GCAGGGACTC
    CGATCGGGAG AGGGAGCGTG ATAGAGAAGC AGACAGGGAT AGGCAGCAGA
    GACACCATTC TAAGGACAGA AGTTCAGGAT ACTCTGACAA AGAGAAGTCA
    AGGCACCGCT CATCAAGAGA TCGTGGTGAT CACTACAGTT CGCACTCATC
    TCGTGACAAA GATCGGCACA GGCGGCAGTA ATCTAGCAGA GCTCGAAAAC
    ATGTAAACTG ATGAAGTACA CGTTGCACTA TCGTGGTAAA ATTGCCATTG
    CAACTGGGTT CCGGGGTGTT TGTTATGATT GTTAAACTCT TTTTTTATTT
    GCAACAGAAA AAGAATTCTT CTTTTGTGGT GAGTATCAGA CTTCATAGAC
    TTAGCTTTGT ATGACGCGTG GGTCTGGGCA TGAATCACTT GTTATGGGAG
    AAACTTATTC TTGCTATGCA AATCTATATA TCAGTTGATT CT

    Gene models with high sequence identity

    1. AT2G26430.1 [+] show detail - arginine-rich cyclin 1
      E-value: 6e-121; Score: 431.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYCLIN T,K-RELATED 1e-107
    HMMPanther Transcription regulator cyclin 1e-107
    superfamily Cyclin-like 5.2e-31
    superfamily Cyclin-like 2.3e-14
    HMMPIR Cyclin L 2.3e-231
    HMMSmart Cyclin 2.2e-11
    HMMSmart Cyclin 0.00015
    HMMPfam Cyclin, N-terminal 4.4e-14
    Gene3D Cyclin-related 1.2e-31

    See the detailed result >

    AT2G26430.1

    Model type
    Protein coding
    Short Description
    arginine-rich cyclin 1
    Curator Summary
    Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.
    Computational Description
    arginine-rich cyclin 1 (RCY1); CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 14137 Blast hits to 8002 proteins in 370 species: Archae - 18; Bacteria - 504; Metazoa - 7867; Fungi - 2024; Plants - 1419; Viruses - 16; Other Eukaryotes - 2289 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR