K30516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30516

Determination of introduced cDNA(s)

  • J033115J18 - Rice Full-length cDNAs - Original: J033115J18

    full reading [+] show sequence

    Nucleotide sequence: J033115J18 - full reading 
    GGTCATCAGT AGAGTAGCAC ACAAACCAAA CCCAATTTTA CCCTAAACCC 
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGATCATGG CGGCGGCGGC 
    GGCGAGTCTG GTGTCCCTGC CCCTCCTCTC GGCCATCTTC GGCGCCGCCA 
    TCGCCCTCCT CTTCCTCTCC GGATACCTCC GCCGCAAGCG CGCCGCCATC 
    GCCCATCTCC CCCCTTCCGC CACCGCCGCC GCCCCGGACC AGCCCAAGCA 
    AGTTCGACCA TCCAACCAGA ACCAGCCTAA GAAGGGACAC CAGCGATCTC 
    ACCACGCCGT CGATAAGGAC GCCGCAAAAA AGCACCATCA TCTTGATGTC 
    AACACTTTGA GGGGGCATAC TGATTCAGTC ACAGCACTTC ATTTCTCCGA 
    TGATGCCTGC AACCTGGCCA CCGTATGTGC GGATGGAGCT GTCAGAGTAT 
    TCAGGGTTGA TGATGTCTCA AGCAAGAGCT TTAAAATTCT GAGGATCAAC 
    TTGCCCGCTG GGGCACATCC TACAGCTATT GCTTTCTCAC AAGGGGCATC 
    ATCAGTTGTT GTGGCAGCGC AAGCACTTTT AGGCTCATCT CTCTACATGT 
    ATGCGGATGT TGGTGCTCCT CCAGCTGGCG GAAACAAACA GCAGGGCAAG 
    CTTTCTCCCC CTGAGATAAA GTGGGAACAC CGTAAGATTC ACGGCAAGGA 
    GTCAGTGCTG AATCTTGCGG CAGCTCGTGC AACCTATGGG ACTGGTGATG 
    GCAGCACAAT ATTGATTTCT TGCTCTGAAG CAACTGATAT CAAAATTTGG 
    CATGGGAAAA GTGGAAAGGA GTTGGGAACA GTCGACACCA ATCAATTGAA 
    AAATAATATG GCTGATATAT CCCCAAATGG CCGTTTCATA GCTGCTGCAG 
    CTTTTACAGC TGATGTCAAG GTGTGGGAGA TTGTTTATTC AAAGGATAGC 
    TCTGTGAAGG AGGTCAATAA AGTTATGCAA CTTAAGGGTC ACAAAAGCGC 
    TGTTACTTGC CTGTGTTTCG CTCTGAATTC TGAGCAGATT ATTACAGCTT 
    CCAAAGATGG TACAATTCGA GTATGGAACA TTAATGTAAG GTACCATCTT 
    GATGAAGACC CTAAAACCTT GAGAGTTTTG CCAATTCCTC TCCATGATTC 
    AAAAGGTTCT GTTTGCCAGT ATGATCACAT GAGTGTATCT CCTGATGAGA 
    AAGTTCTGGC CACGACAAGT GGATCAACGC TGCAATGGTT ATGTGTGGAA 
    ACTGGTGCAG TTCTTGATAC AGCTGAGAAA GCACATGAAG GTGATATAAC 
    TGGCATTGCC TGGGCTCCAC GAACAATTCC AAATGGTGGA ACTCCTGCTT 
    TTGTTTTAGC GACTGCTGGA GTGGACAAAA AGGTGAAGCT GTGGTTAGCT 
    CCTAAGGCTA TTTCAACCTG AATGAGTGTG GTTGGATCCT GGTCACCCTC 
    TACAGCGCAG ATTCGGTGTG GGCACTGAAG GAAGAGAAAA AAACGATGAA 
    AGATAATGCA GATATGTTGC TTGAGTTGAG TCCTTACTGA CGGGAGTCGT 
    CAAACATAAC ATGCAGAGAG AGTTTGTGAA GGGGAGACAC TGCACTTTTC 
    TCTAAATACA TATCTGTCAA CATTTTGGAA ATAGGTTGCC TGCTGCTCAC 
    AATTTTCCCT TTTCTTGTTA GAACAAAAGA AACTAGAGTG GAACTTGGAA 
    GTAACTTATC GAGTTCTCTT GCATTCAGTA TGCATATGTT AGTTACTCC

    Gene models with high sequence identity

    1. AT4G00090.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 3e-140; Score: 496.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 1.6e-07
    HMMPfam WD40 repeat, subgroup 6.8e-11
    HMMPfam WD40 repeat, subgroup 4.2e-05
    HMMPanther TRANSDUCIN BETA-LIKE 2 PROTEIN 5e-28
    HMMPanther WD40 REPEAT PROTEIN 5e-28
    superfamily WD40 repeat-like-containing domain 4e-37
    HMMSmart WD40 repeat 6.3e-06
    HMMSmart WD40 repeat 180
    HMMSmart WD40 repeat 7.3
    HMMSmart WD40 repeat 3.8e-10
    HMMSmart WD40 repeat 0.16
    ProfileScan WD40 repeat 2 10.041
    ProfileScan WD40 repeat 2 15.22
    ProfileScan WD40-repeat-containing domain 9.757
    ProfileScan WD40-repeat-containing domain 17.456
    Gene3D WD40/YVTN repeat-like-containing domain 5.9e-32

    See the detailed result >

    AT4G00090.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR