K30148

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30148

Determination of introduced cDNA(s)

  • J023091F16 - Rice Full-length cDNAs - Original: J023091F16

    full reading [+] show sequence

    Nucleotide sequence: J023091F16 - full reading 
    GAAAAGCAAG AATTCGATCG AGAATCACCA TGATGACAAG TAGAATGTTT 
    TCGGCAATGC AGATGCTGAT CATGGTGGTG GTGGCATTGG CCGGGCTAGC 
    TGCCGGAGCG CGCGCCGGCG ACATCGCGAT CTACTGGGGC CAGAACGGCA 
    ACGAGGGCAC GCTGGCGCAG ACGTGCGCGA CCGGTAATTA CAGGTTCGTC 
    ATCGTGGCCT TCCTGCCTGT GTTCGGCAAG GGCCAGACGC CGGTGCTGAA 
    CCTGGCCGGC CACTGCGACC CGGCGTCGAA CGGCTGCACC GGCGTGGGCG 
    CCGACATCAA GTCGTGCCAG AGCCTCGGCA TCAAGGTCAT GTTCTCGATC 
    GGCGGCGGCG TCGGCAACTA CGGCCTGTCC TCCCGCGACG ACGCCAAGCA 
    GGTCGCGGCG TACCTGTGGA ACAACTACCT CGGCGGCACG TCGCCGTCAA 
    GGCCGCTCGG CGACGCCGTC ATGGACGGCA TCGACTTCGA CATCGAGAGC 
    GGCGGGGGCA TGTACTGGGA CGACTTGGCC AGGTACCTCA AGGCGTACTC 
    GCGGCAGGGG AGCAGCAAGA AGCCGGTGTA CCTGACGGCG GCGCCACAGT 
    GCCCCTTCCC GGACGCGTCG CTCGGCGTCG CGCTCAGCAC CGGCCTGTTC 
    GACTACGTGT GGGTGCAGTT CTACAACAAC CCGCCGTGCC AGTACAGCTC 
    GTCCAACGGC GTGGGCAACC TGGCGAGCGC GTGGAAGCAG TGGACGTCGA 
    TCCCGGCGGG ACGGGTGTTC CTCGGCCTGC CGGCGGCGGC GGAGGCCGCC 
    GGCAGCGGGT TCGTGGAGAC GAGCGACCTG GTGTCGAAGG TGCTCCCCGT 
    GGTGAAGAAG TCTCCCAAGT ACGGAGGGAT CATGCTGTGG TCGCGGTACT 
    ATGACGGGCT CACGGGGTAC AGCGACAAGG TGAAGTCCAG CGTTTGAGCT 
    AGCCAGGGTA AGCTCGTGTC AGGTCGGCGT TCGCGTAGAA TCACACGTGC 
    CGCGCGTTCC CTGCAAGATG GAGTAGTTTC TACACATTTC AGAACAAAGC 
    GAACATGTTC AATAAGATGG CCGGCTTGTA TACTCATTTA GAAGCAGAAA 
    AAATTGTGAG AAATTTACGT GTTTGGTGTG TTCT

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 6e-94; Score: 341.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, chitinase active site 0
    superfamily Glycoside hydrolase, catalytic core 4.5e-94
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 1.9e-31
    Gene3D Glycoside hydrolase, subgroup, catalytic core 4e-105

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR