K29422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29422

Determination of introduced cDNA(s)

J033070O18 - Rice Full-length cDNAs - Original: J033070O18

full reading [+] show sequence

GGATCCGAAT CCAAACCCTC CTCCAAGCCC TAATCCAATC CACCCAACGG 
TCTCCTCCTC CTCCCCTCTC CGCTTCCCCC CCGAAACCCT AAACCCCCAC 
CTCCTCCCCC CACCCGCGGT TTCCCGCCCG ATCCCCACCG CCGCGCGCTC 
AATCCGGGTT CGAATTCGAA TCCCAGCTCG AGGCGCCCGC TCGATTCGAC 
CCCCGCGGCT ACTGCTGCTG CTGCTGCCTC GAGGCCTCCA GCTCAGCCGG 
CTTGGCGCGG ATGGTGGCGT CCCCGGCGGC GTCGAGACCT AGGCCGAGCC 
CTAGCTCCGG ATCTGGGAGG AGGAACCCCG CCACGCCCGC GAGGTGTTCG 
ACGGAATGAG CGGTCGGGTT GGGGGTGGAG GAGGAGAGGA GGCGGCGGAA 
GCATGAGCGG GGGCGGAGGG GGAGGAGGCG GGAGCGGGAG CGGGAGTGGG 
AGCCGGGACG AGTACGGTAG GGCGGTGGCG CGGGCGGCCG TGGCGCAGGC 
GCTGGAGGCG GCCGGGTTCG ACTGCGCGCA CCGCTCGGCG GTGGACGCGC 
TCGTCGACGT CATCCTCCGC TACGTCGTGC ACCTCGGCAG GACCGCGGCG 
TTCAACGCCA ACCTCGCCGG CCGCGTCCTC GCCAACGAGT ACGACATCAT 
ACAGGCGCTC GAGGAGATCG GCACCGATTT CGATGGGTTC GTCGGCGCGG 
CCACCTCCGA CCGCTGCCTT GTCGGCTCGG GCGTCGTCAG GGAGCTGATT 
GATTACGTTG AGTCCAAGCC CGAGGTGCCG TTCGTGCGGC CTCTGCCTAG 
CTTCCCGGTG CCGCGCGTGG AGCCGCAGCC AGCTCAAAGC TTCGCGATGG 
CCGGGAAGGA GTCTGGGATG AAGCATGTGC CGGAATGGCT CCCGGTGTTC 
CCGGATCCAC ACACGTACAT AAGGACAGAG GTTTGGAGCG AAGAGGAGGC 
CAAGGCCAGG GTGGACAAGG TTGAGCAGGT GCGGCAGCGG AGGAAGGCTG 
AGAAGTCACT GCTCAGCTTG CAGCGGCGGT TGGCACTTGC AGGTGCTGAT 
GGATTTAGGC CAGCGGTTAC AGAGAATACT GCGGAAAAGG GGAAGGAGAT 
ACAGGTGGCT GGGAGCAAGA GAAATCCATT CCTTGAGCCT GCATTGCCAC 
CTGGGGAGAA GGAGGTGTCT GATGTTGCTA TGCAACCACA GAGGAGGAAA 
ATCTCTGTCC TCGACGCATT TGCACCAGCG ATTCAGGCTG CAAACATGAT 
GGACATTGAT ACTGGGCCAG GTTGGGACAA CAATCAGAAT CAGAAGAGCA 
TTGTTCCCAA AGAGAGGGCA CCGGTGCACC TCAAGATTGG AATTGATAAG 
AAGCCGTTAT CAGCTGTGTT GAATTCAAAA CCCCTGGATC TGAGGGAGGA 
TCCGTCTTTC TTGAAGGAGG AAGTAAAGGA TGAGCGGAAG CGGAGGGCGG 
GCATGATACT AAGGGCATCA ATGGAGAACC CACAGGAGCT TCCGCAGCTT 
TAATGCTGCA TAATGTTGAT CTTGGGATAA GCAGAGCTAT CAACATTGTA 
CATGTTTTCT TTTTCTGGAT CTTCAATGCG CGTTATCTCA AGGTATGTTG 
GAGTGTTCCC GCTTGTATAA CTAATTAGGG GCTTATGGCT AGTAAACTGT 
TAGCTTTAGA ATTTCAGCAA GTAATACATT AGATAGAATG GAATAGGCCT 
ACAGTGCTTT GTAATAATCA TGTTGTTAAA TTTCTACGTA GACATGAAAC 
AGTGAAATGA CAACTAGAAC ATGTGGCACA TACTTGTTTT ACACTGATAA 
ATATTGAGG

Gene models with high sequence identity

AT4G34340.1 [+] show detail - TBP-associated factor 8
E-value: 4e-41; Score: 166.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Bromodomain transcription factor	1e-12
superfamily	Histone-fold	3e-06
HMMSmart	Bromodomain transcription factor	1.20000117458134e-15
HMMPfam	Transcription factor TFIID, subunit 8, C-terminal	5.69999999999999e-15
HMMPanther	PTHR23307	0.000110000029896149

See the detailed result >

AT4G34340.1

Model type: Protein coding
Short Description: TBP-associated factor 8
Computational Description: TBP-associated factor 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565), Transcription factor TFIID, subunit 8, C-terminal (InterPro:IPR019473); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR