K29118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29118

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29118

Determination of introduced cDNA(s)

  • J033023C03 - Rice Full-length cDNAs - Original: J033023C03

    full reading [+] show sequence

    Nucleotide sequence: J033023C03 - full reading 
    GCTCTCTCTC CCGATTCCGA CTTCCTCCTG ATCCACCTCC AAAGCCCACG 
    CCACCCGCAC CGCACCACCC AAAGCGGGGG GAAACCCAAA CCGGCGAAAC 
    CCTAGATCTC TCTCCGCTCC GCCTCGTCGC TCCCCCAAAC CCTAGATCCC 
    CGCCATGCAC CACCCCAGGG CGCGCTACCC GCCCGGCTAC ACCTCCGGCG 
    GCGGCGGCGG AGGCGGAGGC GGAGGAGGAG GCGGCCGTGG TAATGGCGGC 
    GGCGGATTTG GAGGAGGTGG CGGCGGCGGC GGCGGGAACC ACGGCTACTA 
    CGGCCGGGGT CCGCAGCCGC AGCCGCAGCA GCAGCACTAC CACCACCAGG 
    CGCAGCAGCT GCATCAGCAT CAGCAGCAGC AGCAGCACGC GCAGAGGAAC 
    AGCTCCTCGC AGCAGCAGCA GTGGCTGCGG CGGGACCAGG CCACGGCGGC 
    GGCTGCGTCC GGGGAGGTCG CGGCGAGGAC GGCGGCGCAG CTGGAAGCCG 
    TCGACTCGAG CTCTGAAGAT TGGAAGGCAC AATTGAATTT GCCAGCTCCA 
    GATACACGTT ATAGGACAGA GGATGTCACT GCAACGAAAG GCAACGAGTT 
    TGAGGATTAC TTTTTGAAAC GTGAACTACT AATGGGAATA TATGAGAAAG 
    GATTCGAAAG GCCATCACCT ATTCAGGAAG AAAGCATTCC AATAGCTCTG 
    ACTGGTAGCG ATATTCTTGC AAGAGCTAAA AACGGCACTG GCAAGACTGC 
    CGCATTTTGC ATTCCCGCAC TTGAAAAAAT TGATCCAGAG AAAAATGCCA 
    TACAAGTTGT TATATTGGTA CCAACACGGG AACTAGCTCT GCAGACCTCA 
    CAAGTTTGTA AAGAGCTTGG GAAGTATCTG AATATTCAAG TTATGGTTAG 
    TACTGGTGGA ACCAGCTTAA AGGATGACAT TATGCGTTTG TATCAACCTG 
    TTCATTTACT TGTTGGGACA CCTGGTCGGA TACTAGATCT AACTAGGAAG 
    GGCATCTGTG TGCTGAAGGA TTGTTCAATG CTCGTAATGG ATGAGGCAGA 
    CAAACTGTTA GCTCCAGAGT TTCAGCCTTC CATAGAGCAA CTCATCCATT 
    TCCTTCCAGC TAATCGTCAA CTATTGATGT TTTCAGCAAC CTTTCCAGTA 
    ACCGTTAAGG ATTTCAAAGA GAAATACCTA CCTAGGCCTT ATGTTATTAA 
    TCTCATGGAT GAACTAACAC TAAAGGGAAT TACACAATAC TATGCTTTCG 
    TGGAAGAAAG ACAGAAAGTT CACTGTCTGA ATACACTTTT CTCGAAGCTT 
    CAAATAAACC AGTCCATTAT ATTCTGTAAC TCTGTTAACA GAGTTGAGCT 
    ACTGGCTAAG AAAATCACCG AGCTTGGCTA TTCATGCTTC TACATTCATG 
    CAAAAATGTT GCAAGACCAT CGAAACCGAG TGTTTCATGA TTTTCGCAAT 
    GGTGCTTGCA GAAACCTTGT GTGCACAGAT CTGTTTACAA GAGGAATTGA 
    CATCCAAGCT GTGAATGTTG TCATTAATTT TGACTTCCCT AAGACTTCTG 
    AAACATACTT GCATAGGGTT GGTCGTTCAG GGAGATTTGG ACACCTTGGT 
    TTGGCGGTGA ACTTAATCAC TTATGAGGAC CGTTTCAACT TGTATCGGAT 
    TGAGCAAGAA CTTGGGACAG AAATAAAAAC GATACCCCCA CAAATCGATC 
    TGGCAGTGTA TTGTCAATGA TCAATGTAAC ATTGTAACGG TGTTTTTATC 
    ATTTACTTAT TGTTAGGCAA GTACATCAGA TGTACATAGC ACCTCATCAG 
    GGTTTTATTT GGTGCCTTGA TGACACATCT AAGCTTATAT TCCATTAGTG 
    AGGAAGTGTT TTCTGTCGGC ACTGATACTA ATCATGTTAA CTGTGGACTT 
    GCATTTTTGG CTGCTTGAAG ACGCTGCTTG AAGACCCAGG GCTGCGGCCA 
    AACTGAACCT TTTTCTTGCT CCTTGTATCT GCTCAATATT TGCTTTATAT 
    TCATTTGCTA GCGACAGTTT TGGTTGTGTT ATATTAGGAT ACTGCTGCTT 
    GAGTCTGTTA CCGTCACTGT GGTTCCTTAA TTTTCCTTTC CTTTTTCCCT 
    TTTCTTCTCA TGTTTGGATT GGACTAGTAG AAGTATTTCC CTCACTGTAT 
    TCCTCGTGTC AATTTCTATT ATCCTTGGTG T

    Gene models with high sequence identity

    1. AT4G00660.2 [+] show detail - RNAhelicase-like 8
      E-value: 0; Score: 753.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ATP-DEPENDENT RNA HELICASE P54 0
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 0
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 30.038
    ProfileScan DNA/RNA helicase, C-terminal 23.729
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.097
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    HMMSmart DEAD-like helicase, N-terminal 6.9e-57
    HMMSmart DNA/RNA helicase, C-terminal 3.6e-30
    superfamily P-loop containing nucleoside triphosphate hyd 5e-56
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-47
    Gene3D no description 2.3e-65
    Gene3D no description 6.3e-47
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 2.3e-47
    HMMPfam DNA/RNA helicase, C-terminal 6.2e-25

    See the detailed result >

    AT4G00660.2

    Model type
    Protein coding
    Short Description
    RNAhelicase-like 8
    Computational Description
    RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR