K29034

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29034

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29034

Determination of introduced cDNA(s)

J013159M16 - Rice Full-length cDNAs - Original: J013159M16

full reading [+] show sequence

GAATCTTCGC CCTCCTCCTC CTCCTCGTAC GCGCCCACGC GGTTCTCTTT 
CTGCCCCCTC GATCGATTTG AGCAGGGAAC GGAAGGGGGA GGTTTTTGGA 
GGAGGCCATG GTGCCGTCGG AGAGGGGGGA CGTCGCCACC GCCATCAGAC 
CCGCCGCTGC CGACAAGCTC GTCCATGGGC CTATCTCTGA CAAGAAGTGC 
CGGAAGAAGG TCCCGAGGAA GGTTCACAAA TCTGAGAGGG AGAAGCTTAA 
ACGCGGGCAT CTCAATGATC TGTTCGGCGA GCTGGGTAAT ATGCTAGAAG 
CGGATAGGCA GAGTAATGGG AAGGCATGCA TACTAACTGA CACCACCCGG 
ATCTTAAGAG ATCTGCTTTC TCAAGTAAAA TCTCTCCGGC AAGAAAACAG 
CACCCTCCAG AATGAATCTA ATTATGTTAC GATGGAAAGG AATGAGTTGC 
AGGATGAAAA TGGTGCGCTA CGCAGCGAAA TCTCTGACCT CCAAAACGAG 
CTGAGGATGC GTGCGACAGG GAGTCCAGGT TGGGGCCATG GCGCGACTGG 
ATCACCTCTC CCCGTTCCTC CCTCTCCAGG CACGGTTTTC CCATCGCAGC 
AGCCAATGCA GCCATCTCCC ATGACAACAA GCACAGTGTT CCCCTTGCAG 
CAGCCACTGC CACAACCAAC AGTCATTGAG CCCTCTGCAA GACAGCCACT 
GGAACTGAAG CTCTTCCTAG AAGCACCCCC CGCCGAAGAC CCTGAACCAT 
CAGAAGACCA GGAGGCTCCG AACAATGTGG CACGACCGCA GCCGAGGTAC 
CCAACAGAGG CATCTTCTTG GCCTATTAGC CTGGGACTTC CAAGAATGGA 
AGATGAGCAA ATGTAGTGGT AGCACGATAG ATGATAGCAC AGGTAGAGAT 
TGAGAGGGTC TGTTTTTAAT GCATGCAGGA ATTCCACACG AAAACACTTC 
TGTCCTTGCA TGAAAACTGG AAAATTTCCT GCATTCCAAG TAAGACCTGA 
GTAGATCAGC TCCAACCAAT CAGAAACTCA CTTTGAGCCT AGAGGATATA 
CTACTGAATG ATGTGCATGT AAATATTTCA ATCTCCCTTT TGTTTCTGTA 
AACTCTAGTG AGAATAGAAC CCGTTTTATC CCCTT

Gene models with high sequence identity

AT3G47640.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
E-value: 2e-23; Score: 107.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Helix-loop-helix DNA-binding	1.7e-10
Coil	coiled-coil	0
Coil	coiled-coil	0
Gene3D	Helix-loop-helix DNA-binding	8.1e-05

See the detailed result >

AT3G47640.3

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.
Computational Description: POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
Link: InterPro Scan - TAIR