K28606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28606

Determination of introduced cDNA(s)

J033114E21 - Rice Full-length cDNAs - Original: J033114E21

full reading [+] show sequence

GTGCTATACG CATCTTCCCT AGCTTGCTAA GCTAGCTAGT CTTCTCCTTC 
CTTTCTCCTC TTCCTCCTCC TCCTCTTCTT CTCAATCTTG CTCAGCAAAT 
CTTGTCGGGG AGAGAGAGAG AGAGATCAGC AAGGAGAAGA GGGAATTAAG 
CTAGATCGAG GTAGTCGTCG ATCGATCGAT TGAAGATGGG GAGAGGGAAG 
ATTGCCATCA AGAGGATCGA CAACACGATG AACCGGCAGG TGACCTTCTC 
GAAGCGGCGC GGCGGGCTGA TGAAGAAGGC CCGGGAGCTG GCCATCCTCT 
GCGACGCCGA CGTCGGCCTC ATTGTCTTCT CCTGCACCGG CCGCCTCTAC 
GACTTCTCCA GCTCAAGCAT GAAATCAATA ATAGAGCGGT ACCAGGAGGC 
AGGAGAGGAG CATTGTCGGT TGCTGAACCC AATGTCAGAG GCTAAGTTTT 
GGCAGCGGGA GGTTACAACT TTGAGGCAGC AAGTGCAAAA CTTACACCAC 
AACAACAGGC AACTTTTGGG AGAGGAAATC TCCAACTTCA CAGTTAGAGA 
TCTGCAGCTT CTCCAGAACC AAGTTGAGAT GAGCCTACAT TCCATAAGAA 
ATAAAAAGGA TCAACTTTTG GCAGAGGAGA TTCTAAAACT CAATGAAAAG 
GGGTCTCTTG TTCAAAAGGA GAACAGTGAA CTTCGCAAGA AGTTCAACAT 
TGCTCATCAA CGCAACATAG AATTACACAA GAAGCTTAAC TCTGGAGAAA 
GCACGTCAAG TGAGCAAGTT ACCAGAAGCT CAAAGGATCC CGGAGAATCG 
AGTACACCCC GTGATTCACG TGTGTGTATT GACCTTGAAT TGAGTCAAAA 
AGAAGTTGAA GATGAATAAC ACATGATCAA GTGTTAAAAA CAACATGATG 
GCCAGTAACT TTTGCAGCAT CACGCCTACT ACAAGCGCAA GAAAAGCTAG 
CTACTACTGG AACAAGGGAT CTTAATCATG TTTTGAAACT TAATTAGTAA 
TATTTTAAAA AATCGTACTA TACTAATCAT GATGTGTAGC GTATTGCACC 
ACTGAATTTA TTACTGTAAT TAACATGGTG AGTGTTAAAA TATTTTGTGA 
TATC

Gene models with high sequence identity

AT3G57230.1 [+] show detail - AGAMOUS-like 16
E-value: 6e-62; Score: 234.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Transcription factor, MADS-box	30.852
ProfileScan	Transcription factor, K-box	14.371
HMMSmart	Transcription factor, MADS-box	4.9e-37
superfamily	Transcription factor, MADS-box	7.7e-31
HMMPfam	Transcription factor, MADS-box	9.3e-24
HMMPfam	Transcription factor, K-box	1.3e-20
PatternScan	Transcription factor, MADS-box	0
Coil	coiled-coil	0
HMMPanther	MADS BOX PROTEIN	2.4e-60
HMMPanther	MADS BOX PROTEIN	2.4e-60
FPrintScan	Transcription factor, MADS-box	3.5e-27
FPrintScan	Transcription factor, MADS-box	3.5e-27
FPrintScan	Transcription factor, MADS-box	3.5e-27

See the detailed result >

AT3G57230.1

Model type: Protein coding
Short Description: AGAMOUS-like 16
Curator Summary: MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
Computational Description: AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7328 Blast hits to 7327 proteins in 923 species: Archae - 0; Bacteria - 10; Metazoa - 652; Fungi - 320; Plants - 6229; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link: InterPro Scan - TAIR