K28304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28304

Determination of introduced cDNA(s)

  • J023148G19 - Rice Full-length cDNAs - Original: J023148G19

    full reading [+] show sequence

    Nucleotide sequence: J023148G19 - full reading 
    GAGGCGTCGG GGTTTCTGCA GGACAAATAC AAGCAAGCAC GGCTGGCCCT 
    GGGCGACGTG ACGCCGGCGG AGCTGCTGGT GCAGGAGGCG ACCAACAACG 
    ACGGCGGAGT GGGCCCCGAC GCCAGGACCC TGGCCAGCAT AGCCGACGCC 
    GCCTTCGACA TGGACGACTA CTGGAGGATC GCGGGCGTGC TGAGGCGGAG 
    GATGGCCCGC GCCGGCGACT GGAAGGAGTG GAGGCCCGTG TACAAGGCTC 
    TGGTGGTGCT GGAGTTCCTG CTCACCCACG GGCCCGACGA GGTCCCACGA 
    GACTTCCTGC CGGACGTTGC CGCCCTGCGC GACCTACGCG GCTTCACCCA 
    CGTCGACGAC AGGGGCTTCG ACTGGGGTGC CTGCATGCAG AGGCGCTGTG 
    ACAGCGTCCT CTCGCTGCTC ACCGACGCCG AACGCCTCCG CGACGCACGA 
    CGCCGCATCC GCGTCTCCCA CTCTACTCAC GAGCTGGTGC AGCAGCATGG 
    TTCCCCTTCC TCCTCCTCGG GGTCCCCCTC CTCTGCTTCC TCCCGGACCT 
    CCTCGCAGTC GCACGCCAGC AGCTGGTCCG TCGCCTCCTC CGATAGCCCC 
    ACCATGGTCT GCCACTGTGC CGCCGCCGCC GACTACCGCC ACGACAAGAA 
    GTTCGACGCC TACACGGCGG ACGACGACTG GATGCAGCAC CTGCAGGTTC 
    ACAACACCAC CACTACGCTG GAGTACGACG ACGACCACGA CCACGACCAC 
    GACTGCCCGA ATCATCCTCC TCTCACTACA CCCCGCAGCT GGGACGCCCA 
    CGACGACCAC GACTGCCCGA ATCATCCTCC TCACACTACA CCCCGCAGCT 
    GGGACGCCCA CGTCCACGAC TTGTCCCTGC TGCAGCGGCG CGGCCGCCCA 
    GGAACAGATG CCACCTTCTG CTCCAGGATG CTTGGCGCCG TCAACGTCAG 
    CAGCCGGGCA TCCGGCTTCC AGAGCTTGTC GCAGCCGGAA CGGAGGTCCG 
    CCAGCAAGAA GCTCCAGCGT CAGCTTTCCA TGGAATATTG ATCCCCCCCC 
    CTCCATTAAT TCTATCATTC CAACAACAAT ATAATTCCGA TCCGAGTTTA 
    GTCCAGCCAG CTAGCTGAAT TGCAGAGCTT AGCCTAAGCC AGCTAGCTAG 
    TAGCTTCTTT GATTTCTTTG GTCCCTTGCT ACACTCGACT CAAATCAAAT 
    GTTATTGTTA CTTGTTTCTT CC

    Gene models with high sequence identity

    1. AT3G23350.1 [+] show detail - ENTH/VHS family protein
      E-value: 2e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ENTH/VHS 8.3e-34
    HMMSmart Epsin-like, N-terminal 3.7e-24
    Gene3D ENTH/VHS 3.9e-34
    ProfileScan Epsin-like, N-terminal 28.08
    HMMPanther ENT1-RELATED 1.2e-51
    HMMPanther EPSIN/ENT-RELATED 1.2e-51
    HMMPfam Epsin, N-terminal 5e-27

    See the detailed result >

    AT3G23350.1

    Model type
    Protein coding
    Short Description
    ENTH/VHS family protein
    Computational Description
    ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1); Has 1024 Blast hits to 1024 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 200; Plants - 173; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR