K28034

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28034

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28034

Determination of introduced cDNA(s)

  • J023001P21 - Rice Full-length cDNAs - Original: J023001P21

    full reading [+] show sequence

    Nucleotide sequence: J023001P21 - full reading 
    GATGGAGGCA GAGCACCCGC ACCAGATCAC ATACACCACC ACCACCACCA 
    CCTCCACCTC ATCCCTCTGC CCGCGCCGCA GGAAGAGAGG AGACGACGAG 
    GCGGCGCACC ACCTCGTGTT CCCCATGGAT CTCGACTCGG CCGCGGCGGC 
    GGCTGCGGCG GCGGCGCACC ACCAGCAGCA GCAGCAGCAG ACCACGTCCC 
    AGGACAAGCT GAAAGCATTG GCTTATGAGT ACGGTCATGA GTTCCGAGTA 
    TTTTCAAGTG TAACATTTGA GTCAATGACT AGCAACTTGC CCGCAGCAGA 
    TCAGGAGGAA GATGATGACT TTTATGAGCT TCAGCCTGCT GACTATTTCA 
    ACTTGGTTTC GAACAGAATA GGAGAACAAT CGAAAGTTTT GAAGACTCGT 
    AAAATGCGTG AAGCAGAACT TGCTGCCCAA CGAGCAAAGA TAAAAAAGGC 
    AGTAATGAGG GTGCGATTCC CTGATGGATA CATACTTGAG GCCGATTTTC 
    ATCCGTCAGA AACAGTTCAA AGTCTGATGG ATTTTCTGAA GAAAGTAATC 
    TCTAGACCAG ACCTGCCATT CTATCTCTAT ACAGTTCCAC CAAAGAAGCG 
    GATAAAAGAC ACTTCACTGG ATTTCTACAC AATTGGTTTT GTTCCTGGGG 
    CTAATGTCTA CTTCTCTTAT GATCTGCCGG AAGGCTCAGA GTTAAATACA 
    GACAGTGTAA AATCAGGACC TTATCTCCGT GAAGAAATTC GGATGTTGGA 
    TGGACTACCA ATTGTCCAAG AACCTGTGCA CCAACCAATT GATTCTACTA 
    TGAACTCTTC TTCTGCTCAT CAATCTGATG TGTCTCAATC AGATTTTGCA 
    CCGCCAGCAA ACAAGAAACC AGCTAAACCA AAGTGGTTCA AAAGGTGATG 
    ATGAGGTGAG ACAGTCAGGG CGCCAAGAAT GCACCACCAG AGGACGACTC 
    TAATGTAGGG GGATAGAGAG TGAAAGCATG ACAATAATGG GTTGCTGTTG 
    GCTTTCTTGA TGGATGGATA CACATTGTAA AATGAAACTT TCCAAAGAAA 
    TTTCACGAGT GCTGCAGAAT GATTTTTTGC GTCTGATAGC ACTGCATTAC 
    ACTGTACACT CCGTTGCTAA CAAAGCCTCC CTTTTCCTGA GTGCATATGG 
    CTGGGGGTGT TTGGTTGATT GCTTCACTTT GTCACGCCAC ACTTCAGTCA 
    TGCCACAGTT TGTAGATGTG TGTTTGTTTC AATGCCACAG TTGTGTCATG 
    CCACACTTTT CT

    Gene models with high sequence identity

    1. AT3G27310.1 [+] show detail - plant UBX domain-containing protein 1
      E-value: 2e-48; Score: 190.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UBX 1.7e-08
    superfamily Ubiquitin-like 5.6e-17
    ProfileScan UBX 12.685
    HMMPanther gb def: CG31188-PA, isoform A (Cg31188-pc, is 7.7e-09
    HMMPanther UBX-RELATED 7.7e-09

    See the detailed result >

    AT3G27310.1

    Model type
    Protein coding
    Short Description
    plant UBX domain-containing protein 1
    Curator Summary
    encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.
    Computational Description
    plant UBX domain-containing protein 1 (PUX1); CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 392 Blast hits to 391 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 47; Plants - 86; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR