K27808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27808

Determination of introduced cDNA(s)

  • J013001N23 - Rice Full-length cDNAs - Original: J013001N23

    full reading [+] show sequence

    Nucleotide sequence: J013001N23 - full reading 
    GTCCGATCTT CTTCTTCTTC CCCCAAAAAT CTAATTAAAA TCCCCTCCCC 
    CAAAAACCCC TCTCACCCGA ATTTCCTCAT GGACTCGGTG CCGGCCGCCG 
    GAGTCGGCGT CGGCGGCGGC GGCGCGGGCG CGGGCTACCC GGAGTCCACG 
    GAGTCATCCC CACGCAGCCG GGGCGGCGAC TCGTGGGACG AGCCCTTCCC 
    TTCCTCCGCC GCGGCGGCGG CCGCGGCTGC CGGGGGAGGG AGGCTCCGCC 
    TCATGTGCAG CTTCGGCGGG CGGATCGTGC CGCGCCCCAC GGACAAGTCG 
    CTGTGCTACC TCGGCGGGGA GACCCGGATC GTGGCCGTCG AGCGGAACGC 
    CTCGCTGGCC GACGTCCACG CGCGGCTCTC CCGCTCGCTC CTCGGCGGCC 
    AGCCGTTTAC TCTCAAGTAC CAGCTCCCCA ACGAGGACCT CGACTCGCTC 
    ATCTCGGTCT CCACCGACGA GGACCTCGAT AACCTCGTCG ACGAGTACGA 
    CCGCATCGCC GCCACCTCCT CCGGCGGCGG CTCCTCCCGC ACGTCGCGGA 
    TCCGCCTCTT CCTCTTCCCG GCCAAGCCCG AGTCATCCTC CTCCCTCGGC 
    TCCCTCCTCG ACGACTCCTC CAAGTCCGAG TCATGGTTCG TCGACGCCCT 
    CAACAGCGCC ATCTCCGGCT CCCTCGACGG CATCCCGCGC GGGATCTCCA 
    CCGACTCCGC CTCAGTCAAC TGCCTCCTCG GCCTCGAGGA CGACTCCTCC 
    ACGCACTCCC GCGGCGGCCC GCCTAACTCT TCTCCCGCCG AGGAACAGCG 
    CGCCAACCAG CAGAAGCTCG CCGCGGCCGC GGCCGTTGCT GCGGCGAGGC 
    ACCCGCACGA CGTGCAGTCC GTGCCGGACT CGCCGATGAT TGACAAGAAC 
    TCCTCGTTCG GATCAACGTC CTCTGCGCCA TCGCTGTCGA ATCTACCGCC 
    GATACGGGTG CGGCCCGAGG ATCGCCCGCC GGATAGCCGA CTCGCCCCGC 
    AGGTTCCCGT TGAGGATCAC TTCGCCCAGA TGGGGATCTC CGATCAGCCG 
    GTGCAGCCTG TAATTGGGGG ATACATGCAG CCGCCGCCAC AGGTGCCGAT 
    CCCCAACATG GCTGTCCCCA GCATCTCCCC CTCGGATGCG TCCAGCCGAG 
    TGTTCTCCGA CGATGACAAG TCCGATCACG GCGGCGGCGG AGGTCGGAAG 
    CCGCAGCCAC CCAAGCCGGA GGTTCCACCT GTCGCTGACC CCACCAACAG 
    AGCCATGTAC TACAACGATA GATCGCCTCC TGCTGAATTG AAGCGTGACA 
    TGCCGGTTGG AACTGATGCT GCCAGCTATC GTGTGCCTGT GCCAGCCCAA 
    GATGCTGCTG CCGCCGCCGC CGCTGCGGCT GCTGCTGCCC AGCAACCCCC 
    AGCTGGGTAT GTGTATGCAC AGATGCATGC GCCGCCACCG CAGCAGCAAC 
    CCCCACCACC ACAGCAGCAA CAGCCAGTCC CACAGCAATA TGTCACTGCA 
    CAAAATCAGC ATTTTCATTC ACAATCCAGC TACTGGCACA TTCATCCCAA 
    TCCAATCCTA TTACCACCAT CCGGTCCCTC AGCAAGCACC ACAGCCGCCC 
    ATGCCGCAGC CTGTGCCACA GCCACAACAA TCACACGCTT TCGACCCAAA 
    TACTGGCATG TATTACATTC CCATGCGCAC GAATGCGCCT CAGGCATATA 
    GCATGCCTCC TGGTGCCGCT GCTGTGCCGC CTCCCACCCT TGTTGACACT 
    ACACCAAAAC CAACCGTGCC AATTCCTCAG ATGGCCGTGA AGCAGCCTGA 
    ACTGCAGCAA CCTGGTTTGT ACCGAACTAC CGCAGCACCT ACCCCTGTAC 
    CAGCGTCTAA TGCTCCTGCG TATGCTGGGA TGGGCTACCA CCATGTTATT 
    CAAACACACC ATCATCCAGC GCCACAGCCT GCAGCGACTG TGGCAGGCAA 
    TTTTGGATAT GACTATGGTG ATCCCACGCG AGCACAGGTC TTCTACTCGC 
    AGGCAGCGGC ACCACCAACA TTGCCACCTC AGTATCAGCC CATGGGCTCG 
    CCCGATGCTG GCCAGGCTGA CCTGAAACAG GCCCGGGCTT CATAGCTCAA 
    GGATTTGTGA ACTCTGGTAT GTTGAGAATC CTAGAAGTGT AGTTATCCTG 
    CCGTTAATTA TCACTATTGT TATTACATGT TACATGAGTC AGTTGGCAAC 
    CAGTGGATGG ATGATGGCAT TAGGCAGCTG TGCATTTGGG ATCAAAATAA 
    GATGAAAATG GGATGGTAGT TCTTGTGTTG GGTGAAACTC AAGAGGGTGT 
    TTGTGATTGG TTCTGGAGAT GCCAATCGCC AATGCTGGAG CAAGTGGCGG 
    GGAGTGGCTT CCAATTCCAA TTGCCGTCTT CTTATTTTTT AAAAAAATAA 
    ATATATAGTG TCTAAAGAAC TCGGTACAAA TTCTGAATCA AGAACTCATC 
    ATTTGTGTAG CCCTTTGTAT ATTTGAACCT GGAAGTTATT GAGGTTGAAA 
    TGTCAGATAA AAGTGTCATT ACTTTGCTTG TAGAAACTTC ATTTGAGTTA 
    AATATCATAT ATATACATCA TTCCTGCC

    Gene models with high sequence identity

    1. AT2G01190.1 [+] show detail - Octicosapeptide/Phox/Bem1p family protein
      E-value: 3e-66; Score: 250.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Octicosapeptide/Phox/Bem1p 2.6e-15
    HMMSmart Octicosapeptide/Phox/Bem1p 3.2e-31

    See the detailed result >

    AT2G01190.1

    Model type
    Protein coding
    Short Description
    Octicosapeptide/Phox/Bem1p family protein
    Computational Description
    Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR