K25608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25608

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K25608

Determination of introduced cDNA(s)

  • J013002N06 - Rice Full-length cDNAs - Original: J013002N06

    full reading [+] show sequence

    Nucleotide sequence: J013002N06 - full reading 
    GGTTGGAGAG AGAGAGAGAG AGAGAGAGAG AGCGAGCCGA GCCTGTGCGG 
    TGCGGCGACG CCTGCTCCTC TTCGCTCGCG CGCGGCATTC CGGTCGTGTT 
    TCTGAGGATC CGGATTGCAC GGTGTTCGGG CTGTTTCGTC AACCATGGGG 
    AAGTCTCCGG CGAAGTGGAT CAAGTCTGTG CTCCTCGGGA AGAAATCAGC 
    CAAGTCCAAC TCTACCAAGG CCAAGGATTT GGCGAAGGCT GCAAATAACA 
    AGCCTGTGCT TTCTGAGGAT CCCCCTGTGA TTTCTGAGCC AGCTCTTGTT 
    AATTCTCACA ACGATGGAAA TGCTGAAAAT TGCAAGTTAC CAAACGGAGT 
    TGCAGTTGAA GCCATGGGTC AAGGAGTGGA GAACCAAAAC ATTGTTGGCT 
    CCAAGGCACC AACTAGTCCA GAGAAACTAA GCGAAGAGCT AGCTGCAGTG 
    AAGGCACAAG CGGCCTTCCG AGGTTACCTG GCACGTAGGG CATTCCGTGC 
    ATTAAAAGGT ATCATAAGAC TCCAGGCACT GATCCGAGGA CATCTTGTAA 
    GGAGACAAGC TGCATCAACC CTTCGTGTGA CATGGTTGAT CGTGAAACTT 
    CAAGCTTTAG TTCGTGGAAG AAATGTTAGA CTCTCCGGTG CTTCCATTCA 
    ATTTGTTGTG AAGTCCGGCC AACATAAGTT TCTGAGTGAT AAACCATCGG 
    ACGCTTGGAA AGAGAAGGTA TCTTCAAACG CATATGTTCG AAAGCTTCTA 
    TCTTCATCAA TTGGGTTAGA AGCTCTTCAC TTGCAGTATG ACAAGAGGGA 
    CCCCAATTCA TTGTACAACT GGTTGGAGAG ATGGACTATA AGCCAGATTT 
    GGAAGTCCTC TTCCCAACCA AAAAAAGTTG CTGATGGCAA ACCACAAGTA 
    AGGAAGGCCA GTTATGCAAT GGAAACTGAG TCAGCCAAAT TAAAGCGCAA 
    TGTTCGGAAG AGTTCTGCTG TCACTGTTGA TAGCTTCCAA ACTAATATGA 
    CAGTTGAACC TGAAAAAATT AAACGAAATT CAAGAAAATT CTCTAGTTCC 
    GCTGCTGATT CAGTACCAGA TAGCCAGTTA TCTGAACTTG AGAAGGTTAA 
    GAGGAACCTT CGGAAGGTAA CTAATTCCAT GGCTGAAGCA TCAAAGATAT 
    CTAGCTCCAG GGCAGATGCC TCAAAGGTAT CTAGCTCCAT GGCTGATGCC 
    TCAAAGGTGT CTAGCTCCAC GGCTGATGCC TCAAAGGTAT CTGATTCCGT 
    GGCTCAAATC CCACCTAGTC TCGTGAACGG GATCTCTGAT CATCAAGACA 
    ACCAATGTGA GGAAGCACAA CAGAATGCAT GCGTGTCATT TCCTCCTGAA 
    ACTCAGGAGT TGCACAGTGG CATTCTGTTG GAGGACAATT CACATATGAA 
    TCTGTTGGAA CCTGATTTAA TATCTAACCC GGAAACTCCT TTCACTTCGA 
    TTTTAACCTG GGAAAAATTT AATGATTCTA CTGCTGATGC TCAAGAAGTT 
    GAAGTTCTGC CACTGCAGAA CATTGATAAT GAAGATAATT TCCCAGAAAA 
    TGGTGTCTTA GGAAAGAAAG AGAAGCCAAG GTCCAAGGAA GAACCTCTGT 
    CTAATGGAAA CCTTAAAACT AGCAAGAGGA GGTCTTCGTT CTCCACCAAA 
    TCAGATTACC CGGAAAATGG AGCCCAGAAT ACGCCAGTTC CACGAAGGAA 
    GCCAAGCTAT ATGGCTGCAA CAGAATCTGC AAAGGCAAAG TTGCGAGGAC 
    AGAATTCACC AAGACTGGAT TCTGATTCAC CAGCAGACAT GAATGGCTTC 
    ACACGCCGCC AGTCTCTACC TTCTTCTACA AACAACAGAG CGATCAGAGC 
    TGAATGGAGA CGGTGGTGAG GACAACCAAC TTCCATTTGA ACGGTGCAAC 
    GTTGTGGTGG ATGAAGTGCC CTGCTGTCCG TGAGATTGTC GCCATTGTTT 
    TGTTCAAGAT GTAAAAATAT GTTGGCCCTG TGTTGATCTA TTATCTGTTG 
    CATATTTGAG TTGTTAATTT ATTATCCATT GTTTCTTGTG

    Gene models with high sequence identity

    1. AT1G74690.1 [+] show detail - IQ-domain 31
      E-value: 7e-58; Score: 222.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam IQ calmodulin-binding region 4.9e-05
    HMMPfam IQ calmodulin-binding region 0.0026
    Coil coiled-coil 0
    HMMSmart IQ calmodulin-binding region 0.00053
    HMMSmart IQ calmodulin-binding region 30
    ProfileScan IQ calmodulin-binding region 10.512
    ProfileScan IQ calmodulin-binding region 8.517

    See the detailed result >

    AT1G74690.1

    Model type
    Protein coding
    Short Description
    IQ-domain 31
    Computational Description
    IQ-domain 31 (IQD31); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 30 (TAIR:AT1G18840.2); Has 8498 Blast hits to 6418 proteins in 674 species: Archae - 21; Bacteria - 823; Metazoa - 3400; Fungi - 838; Plants - 1044; Viruses - 44; Other Eukaryotes - 2328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR