K24601

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24601

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24601

Determination of introduced cDNA(s)

  • J013011H16 - Rice Full-length cDNAs - Original: J013011H16

    full reading [+] show sequence

    Nucleotide sequence: J013011H16 - full reading 
    GAGACATCCT CCTCGTCGTC GGCCGTGTCA TTGGCGGCGC CGGCGCCGGC 
    GCCCCAGGAG TTCTCGACGC CGCCGGGGAG GCGGGGAGCT CGTCGTCTTC 
    TCTCCTCCTC CTTTCTCCGT CCCCCCCCTT CGGCATCCGC TGCCGACCCC 
    GCGACCCGAG CACATCCGCC GGCGGCGCCT CTCCGCCACC TATCTCCGAC 
    TACTCAGTTC ACGCTGGTTG CGCTTGCGCA CATCCTGACT AAGGGCACCT 
    GATAGGGCAA CAGTGATTAG TTCCGTGGAA AAGGACTTTT GGATACGGTT 
    TAGCTAAAAT GGCAAACATG AACATAACCA CCATCTTGGA GAAGATGACA 
    GGGAAAGATA AGGACTACAG ATATATGGCA ACTTCAAATT TGCTTAGCGA 
    TTGAACAAAG AGGGCTTCAA AGCTGACCAA GACATTGAGC CAAAGTTGAC 
    TACTACCGTT CTTCAACAAC TGGAAGATAC TTCAGGAGAA GTCTCTGGTT 
    TAGCTGTTAA ATGCTTGGCT CCACTTGTCA AGAAGGTTGG TGAGGATAGT 
    GTGGTGGAGA TGACCAACAT TCTTTGTGAT AAGTTACTCA ATGGAAAGGA 
    CCAACATCGA GACACTGCTA GTATTGCTCT GAAGACAATC ATTGCGGAAG 
    TTACGACAAC AACACTTGCT GAAAAGATTT TGGTGTCTCT TGCCCCACAG 
    CTAATCAAGG GCGCCACTGC TGGAAAAAGT GCGGAAGTGA AATGCGAGTG 
    CCTTGATATA TTGGGGGATG TACTTCATAG ATTTGGCAAC TTGATCACAA 
    AAGATCATGA TTGCATGCTG ACTGCCTTGT TATCCCAGTT GAGCTCTAAC 
    CAAGCAAGTG TTAGGAAAAA GTCTATTTCT TGCATTGCAT CACTTGCTGC 
    ATGTCTGTCT GATGATTTAT TAGCCAAGGC AACTTTTGAG GTTGTCCAGT 
    TGCTTAAAAA TAGAAGTGCA AAATCTGAAA TTGCCTGAAC AAATATCCAG 
    ATGATTGGTG CTCTAAGTCG CTCGGTTGGA TACCGTTTTG GGCCACACCT 
    TGCTGAAGTT GTTCCTTTGC TCATAAACTA TTGTACAAGT GCATCAGAAA 
    ATGATGAAGA GCTCTGTGAA TACAGCTTGC AGGCCCTCGA GAGTTTTATG 
    CTGAGGTGTC CAAGAGATAT ATCTCCATAT TGTGAGAGTA TTTTAAATCT 
    TGCATTGGAA TATATAAGCT ATGATCCTAA TTTCACCGAT AGTATGGAGG 
    AGGACACTGA TGATGAGGCT CAGGATGAGG AAGATGATGA GTACTTAATT 
    GATGCTCTTA CAGTAATAGA TAAATGTTAT CTGTTTACTT GATCAAAATA 
    TGTTTTCGAT ATTTTCTCCA GTGAGAGCGC AAATGAATAC ACAGATGATG 
    AGGATGCAAG CTGGAAAGTC CGGAGGGCTT CAGCAAAGTG CTTATATGCA 
    ATTATAGTAT CTCGTCCTGA AATGTTGTCT AAGATGTATC TGGAGGCTTG 
    TCCAAAGTTA ATTGAATGGT TTAGGGAAAG AGAGGAAAAT GTAAAGATCG 
    ACATCTTTAA CACATTTATT GAGTTGTTAC GCCAAACTGG TAACATGACA 
    AAAGGATAAG GTGACATTGA TGAGTCTAGC CCTAGATGGT TGCTGAAACA 
    AGAAGTACCT AAGGTTGTCA AATCCATCAA TAGGCAGTTG CGTGAAAAAT 
    CAATCAAGAC AAAGGTTGGA GCATTCTCTG TATTGAAGGA GCTTGTTGTT 
    GTACTGCCAG ACTGTCTTGC TGATCATATT GGGTCACTTG TTCCTGGGAT 
    TGAGAACGCT TTGAATGATA AGTCATCTAC CTCCAACCTG AAGATTGAAG 
    CCCTTGTATT TACAAGACTT GTTATGGCTT CACATTCCCC AGCTGTGTTT 
    CATCCATACA TACAGGCTCT TTCTGGCCCA ATATTGTCTG CTATTGGAGA 
    CAGATATGAC AAGGTCACCG CTGAGGCTTT AAGAGTCTGC GAAGAGCTAG 
    TTCGTGTACT TCGTCCAAAT TCTGAGCCAC ACTCTCCAGA TTACAGGCCA 
    TATATTGGTC CAATCTATAA GGCTATCTTG GCCCGCTTGG CAAATCAGGA 
    TCAGGATCAG GATCAGGAAG TTAAAGAGTG TGCCATATCT TGCATGAGCC 
    TTGCGCTATC CACGTTTGGT GATGGTCTCC AAAGGGAACT GCCGGCATGC 
    CTTCCCGTTC TTGTTGATAG AATGGGTAAT GAAATAACTA GACTTACAGC 
    AGTTAAGGAG ATAGAACACA ATGGACAACC TTTAGGATTA GTGAAATCGC 
    CATCATCAGT AGTAGAATAG AATGAGCAGA TACACATAGT TGGTCTTCTC 
    AAGGCATGAA GATGAAATTC TTTATCATGG ATGAAAAGTA TAATATGGAA 
    GCCAAAGGGA TTTATAAGAA GATTGATGAG TTGGTCAGCC TGGCTAATCA 
    TTCAATGTTT CTGGCTCCAG TGTTTGCTTT GCATGATAAG AAGATCGGTC 
    GTATTATTCT GTGTTATCCA AAATTTGATC AACTGCTTAA AGATTGGCTG 
    CCTGCTCAAG CCTTTTAAAG GCCGGTTTAT ACCACCCATA TGGATGCATC 
    TTATAAAAGA TGTCATATCT TACATGAGCA ACATTGATAA CTTGGCTGCA 
    AGCTTAGGAA GTATTGACTC ATATGTGTTG GAGACAAAGC CCGAGAAAAT 
    AAAGGTCATC CTTTTTCCTT TTGAGTCAAG AGAAGTAAAT TGGCGAAAAG 
    ATTTTGCTAC ATTTCTGATA GAACATCTTC GGAACAAATG GAAATCCACC 
    ATGTTGGATC ACTTCATCAA CATCTTACAA AAAGATTTCA AAATTGGGTA 
    CATTCAACAT CATCCGTTGT TGCAAGATTT CAATCAGCTT TCTAACATGA 
    TAAGGATGAC ATGGAAAGAA TCTAAGTATT TAACTGTTGA GAGGAGAGTA 
    TTGCTATCTT CAACATTAAA TGCTATTAGG AACAACATTC CATGGACATC 
    AGTGACAACT ATGGATGCTG TTGTGAATGA ATACATTTCT AAAGCAACAA 
    ATGACTCCTT GGGCCTCTTT ATGGAAATTA AGAAGATAGC AGCACATTAC 
    ATTGAAAACC GCCGAAAACT GAACAAAGAA AAAGGGATAT GCAATAGGAA 
    ACAGGTACAT CCAATTGAGA TAATCGAAGA AATCTGGCCA GGTGCTATTG 
    AAGAAATTTA TGAGCTTAGT TTAAAATCTG AGTGGCTCAT GACTTGACTT 
    GTGAATGGTG AGAGTGAAAA TATCAGTGCT GAAGGATCTG GAGTACTCTG 
    AAAATCATGA ATGGGTTAGT GTTGAAGGCG ATTATGCAAC AATTGGGATT 
    TCAGATCATG CCCAGATGCA AACACGTTCG GCAAGCTAGC GAGTTAAATG 
    GTGGGTTGGA AGAGCTCTAC AGGAAAGATG AGGCAGAACT AGCTCTACAG 
    CAAAAGATGA GGCATAACTT GGTTGAACGT TTTTTTGTTT CTCTTTTTTT 
    TGGGTGAGGG GATCGCCTTT TGTTTCTATT GCATGCTATG TAACGGTGGA 
    GAGAATCATT ATCTTCACTA TTTGAAAAAT GATTCTACAG AAGATGATTG 
    TTTTTTATGG CAGTGCTTGA AGGGCTCTGC TTCGTGGTAA AAAAGAACAC 
    TTGCG

    Gene models with high sequence identity

    1. AT2G02560.2 [+] show detail - cullin-associated and neddylation dissociated
      E-value: 0; Score: 52.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Armadillo-like helical 6.1e-38
    Gene3D Armadillo-like helical 2.4e-15
    Gene3D Armadillo-like helical 3.6e-13
    Gene3D Armadillo-like helical 1.3e-53
    HMMPanther TIP120 2.3e-90
    HMMPanther TIP120 1.1e-13
    HMMPanther TIP120 4.9e-35
    HMMPanther TIP120 1.1e-32
    superfamily Armadillo-type fold 8.6e-14
    superfamily Armadillo-type fold 1.5e-10
    superfamily Armadillo-type fold 1.7e-15

    See the detailed result >

    AT2G02560.2

    Model type
    Protein coding
    Short Description
    cullin-associated and neddylation dissociated
    Curator Summary
    Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.
    Computational Description
    cullin-associated and neddylation dissociated (CAND1); FUNCTIONS IN: binding; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, vegetative to reproductive phase transition of meristem; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), TATA-binding protein interacting (TIP20) (InterPro:IPR013932); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR