K24414

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24414

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24414

Determination of introduced cDNA(s)

  • J033105P15 - Rice Full-length cDNAs - Original: J033105P15

    full reading [+] show sequence

    Nucleotide sequence: J033105P15 - full reading 
    GACTCCTCCC CTTCGCAGCA GCAGCAGCAT TGCTGCTCCT CGCCGCGCCG 
    CCGCCGGCGA CGGCCGACGA CCCGGGCCTC GCCGTCTACT GGGGCCGCCA 
    CAAGGAGGAG GGCTCACTGA GAGAGGCCTG CGACACCGGC CGCTACACCA 
    CCGTCATCAT CACCTTCTAC AACGCCTTCG GCCACGGCCG CTACTCCCTC 
    GACATCTCCG GCCACCCGCT CGCCGCCGTC GGCGCCGACA TCAAGCACTG 
    CCAGTCCAGG GGCATCACCG TGCTCCTCTC AATCGGCGGC CAGGGCGGCG 
    CCTACTCCCT CCCCACCAAC GCCTCCGCCG CCGACGTCGC CGACAACCTC 
    TGGAACGCCT ACCTCGGCGG CCACCGCGCC GGGGTGGCGC GCCCCTTCGG 
    CGACGACGCG GCGGTGGACG GCATCGACTT CTTCATCGAC CAGGGCGGCG 
    CCGACCACTA CGACGACCTC GCCCGGCGGC TCGACGGCTA CAACAAGTAC 
    TACCGGGGCA GGGTCGGCGT GCTCTTGACG GCGACGACGA GGTGCTCGTA 
    CCCGGACCAC CGGCTGGAGA AGGCGCTGGC GACGGGGGTG TTCGCGCGCA 
    TCCATGTGAG GATGTTCGGT GACGAGCAGT GCACCATGTC GCCGAGGTAC 
    TCGTGGGAGA AGTGGGCGGC GGCGTTCCCC GGCAGCAAGG TGTACATCGG 
    GCTGGTGGCG TCGCCGGAGC AGGACAGCGC GTGGATGTTT CAGAAGGATC 
    TCTACTACGA GATGCTGCAG TTCGTCAGGT CGCTGCCCAA CTATGGTGGC 
    TTGGCCATCT ATGACAGGTA CTTCGACAAG AAGGCCAACT ACACTGGTGA 
    GGGTTAATTA GCTAGTGGTC ATCGTCTTTG CTGTCTGAAG TGAAGACTAG 
    ATTTTTACCA TTATGTAAAA GATCTGAATA AAGACACCTC TTTTTTCTGT 
    AACATTGTGA TTTTGATGTA CTTCAATAAT GGACGAATAA AATGAGGTCT 
    CAAAAGCT

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 1e-41; Score: 167.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 1.8e-65
    Gene3D Glycoside hydrolase, subgroup, catalytic core 4.1e-86
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 7.3e-14

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR