K23225

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23225

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23225

Determination of introduced cDNA(s)

  • J023144G04 - Rice Full-length cDNAs - Original: J023144G04

    full reading [+] show sequence

    Nucleotide sequence: J023144G04 - full reading 
    GAGCGGCGAG CCACCGGCAA CCTCATGGAC AAGTGGGTCA TCGCCAATGG 
    CTTGCCCAGC GAGGTCGAGT ACGCGCTGGA TTTCCCATGG AAGGCAAGCT 
    TGCCGCGAGT CGAGACGAGG GTGTATCTGG AGCAGTACGG CGCTAGCGAG 
    GACGCGTGGA TCGGCAAGGG ACTCTACAGG ATGACCCTAG TCAACAACGA 
    CCTGTACCTT GAGGCGGCAA AGGCTGACTT CACCAACTTC CAGAGGCTCT 
    CCCGGCTCGA GTGGCTCAGC CTGAAAAGGT GGTACATCAG GAACAATCTG 
    CAAGCGCACG GCGTGACCGA ACAGAGCGTG CTGAGAGCCT ACTTCTTAGC 
    CGCGGCGAAC ATCTTCGAGC CCAACCGGGC GGCGGAACGC CTGGGATGGG 
    CTCGCACGGC GATCCTCGCC GAGGCCATCG CGTCACACCT CCGACAGTAC 
    AGTGCCAACG GCGCCGCCGA CGGCATGACA GAGAGGCTCA TCAGTGGACT 
    CGCCAGCCAC GACTGGGACT GGAGGGAATC AAAGGATTCA GCAGCGAGGA 
    GCTTACTGTA CGCACTTGAT GAGCTCATCG ACCTCCATGC GTTCGGCAAT 
    GCTTCTGACA GCCTACGTGA AGCGTGGAAG CAGTGGCTCA TGTCATGGAC 
    AAACGAGAGC CAAGGATCAA CTGGTGGGGA TACCGCATTG CTGCTAGTTC 
    GCACAATCGA GATCTGCTCA GGACGGCACG GTTCAGCCGA GCAGAGCCTG 
    AAGAACAGTG CAGACTACGC CAGGCTTGAG CAGATCGCCT CTTCCATGTG 
    CAGCAAACTT GCCACCAAAA TTCTTGCTCA GAATGGAGGA AGCATGGACA 
    ACGTTGAGGG TATAGACCAG GAAGTGGATG TTGAGATGAA AGAGCTGATC 
    CAGCGTGTCT ACGGGAGCAG CAGCAACGAT GTCAGCAGCG TGACGAGGCA 
    GACATTTCTC GACGTGGTGA AGAGCTTTTG CTACGTCGCT CATTGCTCGC 
    CCGAAACAAT CGATGGGCAC ATCTCCAAGG TTTTGTTCGA GGATGTCAAT 
    TAGGAAAATG GTTGACTACT AGAAAGGCAA TAAAAACAAG AGTTGTGTCT 
    ACCAGCATGG CTCGTAAAGT GATGACTGCG AAAATTTTCT CAAAGTGAGA 
    TGAATTTAGT CGATATTTGT TTC

    Gene models with high sequence identity

    1. AT4G02780.1 [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Terpenoid synthase 3.6e-12
    HMMPfam Terpene synthase, metal-binding domain 4.7e-21
    superfamily Terpenoid synthase 2.4e-52
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 1.3e-09

    See the detailed result >

    AT4G02780.1

    Model type
    Protein coding
    Short Description
    Terpenoid cyclases/Protein prenyltransferases superfamily protein
    Curator Summary
    Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis
    Computational Description
    GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR