K22934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22934

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22934

Determination of introduced cDNA(s)

  • J023110K24 - Rice Full-length cDNAs - Original: J023110K24

    full reading [+] show sequence

    Nucleotide sequence: J023110K24 - full reading 
    GGTAGATCAC GCACCTTTCT GGCTTTCAGC AACCCCCCTT TTCACCTCTA 
    CTCTCCTCTC CTCTCCCCGA GACCGAGACA CCGAGACTGA GTCCGTGTGT 
    GTGTGTGTGT GTGTGTGTGT GTGAGTGAGA GAGAGCAGAG CAGAGCAGCG 
    GCTTCACCGG AGGCCTTCTC CCGTCGGAGG TTGCTGATTC TTTCTTGCTC 
    AGAGAACAAA TCAACAATGT GCAGTCAGGT GGCTTGGTTC TGAGAAGAAT 
    TTGGGGGGAG GAAACACGGC TAATGCCGAA TATGTTCGGG TTCTCGAGGA 
    GCCGGATGAG GATCGGAAGA TCGAAAGGGC ACTCAACAGA TCCTTTGGAC 
    AGCTCTAAGA GTCCTTCAGG GCTTGTGAAG CACCTCAGCC TGCCTAATGG 
    GGATGACCAA ATTACAACGT CAGTGAGTGG CCGTGTAGAT GATCTCGCCT 
    TCCGTTGCTC ATCTGACACA TATGATCTCG ACGACCGCGC TTTGGTTAGC 
    TCACGGAACT GGGCTGTCCT TTCTACAGAG GGCAGTAGAC CATCACCGCG 
    TTTTGCGCAT GCAGCAGCCC TTGTAGGGAG CAAAATGGTA GTGTTTGGTG 
    GCGATTCTGG TGATCAGTTG TTGGATGATA CAAAGATATT GAATTTAGAG 
    AAGCTTACAT GGGACTCTGT AGCTCCTAAG GTCCGTCCAT CGCCAAACAG 
    ACGTCCGTCA AAGTTGCCAG CCTGCAAAGG TCATTGTCTG GTCCAATGGG 
    GGAACAGTGT TATTCTTGTT GGCGGTAAAA CTGAACCTGC ATCCGATCGT 
    TTAGCAGTGT GGACTTTCAA TATGGGAACA GAGGTTTGGT CACTTATGGA 
    AGCCAAGGGT GATATCCCTG CAGCTCGGAG TGGCCACACG GTGACCAGAG 
    CAGGTGCTAC ATTGATACTT TTTGGTGGTG AGGACACAAA AGGAAAGAAA 
    CGACACGACC TTCACATGTT CGACCTGAAG TCATCAACAT GGCTACCTTT 
    GAACTATAAA GGCTCTGGAC CTTCTCCAAG ATCCAATCAT GTAGCTGCAC 
    TATATGAAGA TAGGATCCTT CTGATTTTTG GAGGCCACTC AAAATCCAAG 
    ACCCTGAATG ATCTGTTTTC TTTGGATTTT GAGACAATGG TATGGTCAAG 
    AGTGAAAATC CATGGTCCTC ATCCAACACC TCGAGCCGGT TGCAGTGGAG 
    TTCTACGTGG AACTAAGTGG TACATTGCTG GCGGTGGAAG CAAGAAAAAA 
    CGGCATGCAG AAACCTGGGC TTTTGATGTT GTAGAATATA AGTGGTCGGT 
    ATGTGTAGTA CCCCCTAGTT CCTCGATTGC TACAAAGAAA GATTTCAGTA 
    TGGTTCCTTT GTACCACAGG GACAAAATTG TTCTTGTTGC TTTTGGAGGA 
    AACAGAAAGG AGCCATCCGA CAAGGTTGAA ATATTGGTGG TACTGCAAAA 
    TGAACATTCT TTTAGCAGGC GGTCTGCACC AGATGTAGAT CCTTTACTAT 
    ATGAATACTC TCCGAGCACC AAGGAGCTTG CCAGCCATCT TAACAACTGT 
    GCTCCTTTGT ATTCCAATAG TTCTGTTGCA AGGCACAGTC TCGCTTCTAC 
    GGTAGAACAC CCACCTAGAA GGGAATTACT CTCTGAGCCA TTGTTACAGA 
    ATCCAAATTT GGGCGCTTCA CTCCACAGGC AGTTCCATCA ATCAGAAGCG 
    TGCAGTTTAG CCCAAAAACT GCAGAAACCG GTCGACGATG ACAAGTACGA 
    TGACACTGAT GATTGTTCTT CATGTCAAGC AAGCACTCCA AAAGAGTATC 
    GAAGCAAGAG AACTGGAACT GATGCTCAGA TTAACATGGC CAGAATTTTA 
    TCCAGCAAGG AAGAAAATCT GGAGACCACG GGATCAAGTG CAAGAAGGAT 
    AGCAAGATGC TCTTCAGACA TTAGTCATCT ATACAATACA AAAATAGTAG 
    ACTTGATCAA AAGAAGCTCT GCACTTGAAG ACCAGCTTGC GACTGCCTTG 
    GTGAGCAAAG AACAGGCGGA GAAGAATTTA TCGTCGGTCA TCAACAGCAG 
    GGAGCAGCTG GAAAGGAGGC TTGCCAATAA GGAAAAGGAA GCTGAGATGC 
    TGAAGGAGAA GATAGCAGGC TTAGAGTTGG CACAAGAGGA GTCAAACAAC 
    CTCTCGAACA CCGTTCATGC CGATAATGTG CGTCTGGAAC GTGAAGTGGC 
    ATTCTTGAAG GCCATTACAG ATGAGACTCA AAAGGAACTC CATTCGACCC 
    GCCGAGTTTT AGCGGGAGAA CAGTCGAGGG CATTCCAGCT CCAGGTTGAA 
    GTGTTCCATC TCAAACAACG GTTGCAGATG GAAGGAAGAG CGGGAACGCC 
    AAAGAACCCT CCTGTTTAAT CCATAGTAAG CAACAAAGAG CAAAGTGTGT 
    TTAGTTCATA TGTTTACATC TCTGGAATAA TAGTGGTTGT GTGTTTGTAA 
    CATCGTCTTG TACATCAATT TGTTACAGGA GTGGAGTGTA TATGTAATAA 
    CAGGGTTCGG TTAACCATTC TGTTACATGA ACTGATACAG ATTTGTAATT 
    TGGCTGAGAT TTTGTGTGCA GTTGATGAAT TTAGAACAGT TTGCTC

    Gene models with high sequence identity

    1. AT5G18590.2 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 7e-171; Score: 598.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Kelch-type beta propeller 2.8e-37
    superfamily Galactose oxidase/kelch, beta-propeller 9.4e-32
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther RANGAP1-INTERACTING PROTEIN-RELATED 1.2e-124
    HMMPanther KELCH REPEAT DOMAIN 1.2e-124
    HMMPfam Kelch repeat type 2 2.5e-05

    See the detailed result >

    AT5G18590.2

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR