K22913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22913

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22913

Determination of introduced cDNA(s)

  • J023016B15 - Rice Full-length cDNAs - Original: J023016B15

    full reading [+] show sequence

    Nucleotide sequence: J023016B15 - full reading
    GAGAGCAGCA GTCTCGTCTG GAGAAGTGGA CTAGTGGAGT GTCGTGAGTT 
    CTTCGCTTTT GCTTGGCTAA AATCGCCGTT AGAAACTTGT GGAATCGAGC
    AGCTCGCCGC GCAGCCATGG GTACGCGACG CGTAGGGCTC CTCCTCCTCC
    TCCTCCTCGC CGCCGTACTG CTCCAGCCCC TCCTCGCGGC GGCGGCGGCG
    GAGGGCGTGG TCCGCATCGC GCTGAAGAAG CGGCAGGTCG ACGAGACCGG
    CCGCGTCGGG GGCCACCTCG CCGGGGAGGA TGCCCAGCGG CTCCTCGCGC
    GGCGCCACGG CTTCCTCACC AACGACGCCG CCAGGGCCGC CTCGAGGAAG
    GCGAGGGCTG AGGCCGAGGG CGACATCGTG GCGCTGAAGA ACTACCTCAA
    CGCGCAGTAC TACGGCGAGA TCGCCATCGG CACGCCGCCG CAGATGTTCA
    CCGTCATCTT CGACACCGGG AGCTCCAACC TCTGGGTGCC TTCCTCCAAG
    TGCCACCTCT CGATTGCTTG CTACTTCCAC TCGAGGTACA AGGCTGGTCA
    GTCGAGCACG TATAAGAAGA ATGGAAAACC TGCTTCAATT CATTATGGAA
    CGGGTGCAAT TTCTGGCTAT TTTAGTCAGG ACAGTGTGAA AGTTGGTGAT
    GTAGCTGTGA AAAATCAGGA TTTTATTGAA GCTACGCGGG AGCCAAGTAT
    TACATTCATG GTTGCAAAGT TCGATGGCAT TCTTGGGCTT GGATTTAAGG
    AAATCTCGGT AGGAAATGCA GTGCCTATCT GGTACAACAT GGTGAGACAA
    GGTCTTGTTG TTGATCCTGT TTTCTCATTC TGGTTCAACC GGCATGCTGA
    TGAAGGGCAG GGAGGCGAAA TTGTGTTTGG AGGGATTGAT CCTAATCACT
    ACAAGGGAAA TCATACATAT GTCCCTGTCA CTAGGAAGGG ATACTGGCAG
    TTCAATATGG GCGATGTCCT AATTGGAGGG AATTCCACAG GATTCTGTGC
    AGCTGGGTGT GCAGCAATAG CAGATTCTGG AACTTCACTG CTTACTGGTC
    CCACGGCCAT AATTACTCAG ATAAATGAAA AGATTGGTGC TACTGGGGTA
    GTCAGTCAAG AGTGCAAGGC AGTTGTTTCT CAATATGGTC AACAGATCCT
    AGATCAGCTG CGAGCAGAGA CAAAACCAGC GAAAGTATGC TCTTCGGTCG
    GTTTATGTAC TTTTGATGGT ACTCATGGTG TTAGTGCTGG TATTCGGAGT
    GTGGTGGATG ATGAAGTTGG AAAATCAAGT GGTCCCTTTA GCAGTGCGAT
    GTGCAATGCT TGTGAGACAG CTGTTGTATG GATGCATACC CAACTTGCAC
    AAAATCAAAC TCAGGATCTC GTATTGCAGT ACATTGATCA GCTATGTGAC
    CGTCTTCCTA GTCCTATGGG AGAATCATCT GTTGACTGCA GCAGCCTTGC
    ATCCATGCCT GACATTGCCT TCACAATCGG TGGCAACAAG TTTGTTCTCA
    AACCAGAACA ATACATCCTG AAGGTTGGTG AGGGAACTGC TACCCAGTGC
    ATCAGTGGAT TCACAGCTAT GGACATTCCT CCTCCTCGTG GTCCTCTCTG
    GATCTTGGGA GATGTCTTTA TGGGAGCCTA CCATACCGTG TTTGACTATG
    GCAACCTGAA GGTTGGCTTC GCAGAGGCGG CATAATGCCC CCCATGGTGA
    TCGGACGAGT CGGAGAGCCC TTAGCTTTTC AGCTCGGGTT TATCTCCCGC
    AAGCGTGTAG GTATATATTT TAGTGCATGC TCAATAAATA TTGCTACTGT
    GATCTCAAAA CCTGTCTGTT TTAATTTGGC TAAGCTAAAT ATAAGTAGGC
    AGAATTCAGA CG

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 687.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Peptidase aspartic 9.3e-126
    superfamily Saposin-like 6.4e-26
    ProfileScan Saposin B 12.357
    ProfileScan Saposin B 11.982
    Gene3D Peptidase aspartic, catalytic 2.3e-83
    Gene3D Peptidase aspartic, catalytic 1.6e-21
    PatternScan Peptidase aspartic, active site 0
    PatternScan Peptidase aspartic, active site 0
    HMMPanther ASPARTIC PROTEINASE-RELATED 2.3e-242
    HMMPanther Peptidase A1 2.3e-242
    HMMPfam Peptidase A1 2.5e-130
    HMMPfam Saposin-like type B, 1 6.8e-13
    HMMPfam Saposin-like type B, 2 1.4e-11
    FPrintScan Peptidase A1 4e-29
    FPrintScan Peptidase A1 4e-29
    FPrintScan Peptidase A1 4e-29
    FPrintScan Peptidase A1 4e-29

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR