K22433

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22433

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22433

Determination of introduced cDNA(s)

  • J033105G04 - Rice Full-length cDNAs - Original: J033105G04

    full reading [+] show sequence

    Nucleotide sequence: J033105G04 - full reading 
    ATTATTTATC TACATCTCTG TGGCAGATGC GATATTTGCT CCAAAGGTGG 
    AGCGAATGTC GTACGCTGCC TCGCGCACCC CTCGGCCAAA TAAGAGCGGC 
    GGGCTGAGGG AAGATGTCGT TGATGGAGTT GATAGAGTTG CTAAGGGTGG 
    GTGAACACCC GAGGCGGCTC ACCCCTGGCT CTCTCTCACT CCCTACCGAG 
    GGACTGCCCA TGGCGCAAAG GGGCACCCCA TGTGGCGGCT CAACCTTGGC 
    TTGCTCGCGC TTCCCGCCGA GGGATTGCCC ATGGCGCAAA GGGGCACCCA 
    TGGCGGCTGA TTTGTTGCTC TGCATCCAAT CCCTGGAGAA GGCTCCTCAC 
    ATGGATGGTG GGCCTCTTCT GGGGCCTGGC CATGGAGGTC GCACCGTCCA 
    TAGGACCTGC GGGCAGCTGC TGGAGGGGCT TCGCACCCAG GCTGTCAACG 
    TCCATACATA GGACCTGGAC CTGCGGGCAG CTGCTGAAGG GGTCCTGTGG 
    ATGAACGATC CATGGTTGAG CGAGGCTGCC TCCAGGGATG CTGTTAGAGC 
    CTTTTCTACT TCACCTTGCG CATGCAAGTC AACACATCTT GGATGCACTT 
    TCTTTTATAC AACGTGCTGG ATTCTCAAGT CCAACGCCAA TCCAAGCTCA 
    GTCATGGCCA ATTGCCTTGC AGTGTCAAGA TGTTGTAGCT ATTGCAAAGA 
    CAGGATCTGG AAAAACTCTT GGGTATCTAC TTCCTGGATT TATGCATATT 
    AAACGCTTGC AAAACAACCC AAGGTCTGGT CCAACAGTGC TAGTTTTGGC 
    ACCGACAAGG GAGCTTGCAA CTCAGATTTT GGAAGAAGCT GTGAAATTTG 
    GCAGATCATC AAGAATTTCT TCCACGTGTC TATATGGTGG TGCTCCAAAA 
    GGCCCCCAGC TAAGAGATTT GGATAGAGGG GTCGATGTCG TTGTTGCTAC 
    ACCAGGAAGG TTGAATGACA TCCTAGAAAT GCGAAGGATA AGCCTTAAGC 
    AAGTGTCGTA CCTTGTTCTA GATGAAGCTG ACCGTATGTT GGACATGGGA 
    TTTGAACCAC AAATTCGGAA GATAGTGAAA GAAATTCCTC CTCGTCGGCA 
    AACCCTCATG TACACTGCTA CTTGGCCTAA GGAAGTCCGA CGAATTGCAG 
    AGGATCTTCT TGTTCACCCT GTCCAGGTGA CCATTGGAAG TGTTGATGAG 
    CTTGTTGCTA ATAGTGCTAT TACTCAGAAT GTGGAGCTGA TCACACCGTC 
    CGAAAAGCTT CGCCGTCTGG AGCAAATTTT GCGATCCCAG GATTCAGGTT 
    CGAAGGTACT AATATTCTGT ACCACTAAGA GAATGTGCGA CCAACTTGCA 
    AGGACACTTA CTAGGCAATT TGGAGCTTCT GCCATTCATG GTGATAAGTC 
    CCAAAGTGAA AGAGAGAAGG TCCTGAGCCA TTTTAGATCT GGGCGATCTC 
    CTATTTTGGT TGCAACAGAT GTTGCTGCAC GAGGCTTAGA CATCAAAGAT 
    ATCAGGGTTG TGATCAATTA TGATTTCCCC ACTGGCATTG AAGATTATGT 
    TCACCGGATT GGCAGGACTG GAAGGGCTGG TGCCACTGGT GTGGCCTATA 
    CGTTTTTCTG TGACCAGGAT TCAAAATATG CTGCTGATCT TATTAAAACT 
    CTGGAAGGCG CAAACCAACG TGTGCCTCGT GACTTGGCGG ACATGGCCTC 
    TCGGGGTGGG CGTGGTGGTA GGAAGCGTAA CCGGTGGGCA ACCCGCTCTG 
    ATAGGGGTGG TTCGCATTCT GAACTGGATT CTAGGTATGG TGGAAGAGAT 
    GGTCTGTCAG GGTCTTCTGG CAGATTGGAT AGTAGTCGCA GTAGTCGCAG 
    GCATGACTAT GGTGATGATG GACGGTCTCG CAGGTCTGGG AGAGGTCGCA 
    GTAGGAGCCG TAGCAGAAGT GACAGTGATA GGTATAGCCG AAGTCCTAAG 
    AGGTCACGCC GTCATAGCCG TAGCAGGACC AGGAGTCGGA GCCGAAGCAG 
    GAGCAGGAGC TACACTAGGA ACCGTCGTGC TAGCCGCAGC AGGAGCCGTA 
    GCCCTGGTGC TAGCCGTAGG CATGAAAGAA GCGCTACTGG CTCTGGGTCT 
    GCACTGCCAG ACTCTGGGCA CGGTGAGCGC AAAAGAACAC CAGAAGCTGA 
    CCCATCAAGA AACCATACAA ACCACTCAGA CCCGAAAGAT GACCGACACC 
    CAGAGGATGG GAAGGTGGGA AAGGTTGATC TCGATCGGTC GCCTACTCCA 
    CAAGACAAGT CTGGCCCATA TAGTCCTGCT TACAATGGAA AAACCAGTCG 
    CTCAGTGAGC CCTGGTAATC AGGTGGAAGG AAACAACAAA GCTGCGGAGG 
    TTTCTAAGAA TCCTGATCCT TCATCGCCAC CCCATCATGG TAAGACCAGG 
    GAGGACGAAG AGGAAGGTAT GATAGATGAA GATGGAGAGA TAGCTGATGA 
    TCCTCGGGCA AATGCAACCG TGCAGAATGG CGGTGATAAT TGACTCTTTG 
    GTCCCAAAAG AATTTAACAA ACTGCTGAGC AGCCACTACA GATGATCTGC 
    GTGACAAAGC TCAAAATGTT AAAAATTGTC TGAAGCTGTC TTTTCGTAGT 
    CAAAACTTAA GTTATGAAAC TATCCGTGTC GTAGAGAGCT GGAGATTGTT 
    TTGTGCCTGA GTTGTCTTAT AACATTATAT ACTTTGTAGA CCCTGTCGAA 
    GTAGATCATG TGAAGTGAAG TTGGTAGCTC TGTTATTTGT GAACC

    Gene models with high sequence identity

    1. AT3G01540.4 [+] show detail - DEAD box RNA helicase 1
      E-value: 7e-157; Score: 551.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-61
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-49
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 30.346
    ProfileScan DNA/RNA helicase, C-terminal 25.696
    ProfileScan RNA helicase, DEAD-box type, Q motif 7.251
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    HMMSmart DEAD-like helicase, N-terminal 2.1e-63
    HMMSmart DNA/RNA helicase, C-terminal 8.4e-35
    Gene3D no description 3.4e-64
    Gene3D no description 7.5e-48
    HMMPanther ATP-DEPENDENT RNA HELICASE DBP3 (YEAST)-RELAT 2.5e-225
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 2.5e-225
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 6.2e-50
    HMMPfam DNA/RNA helicase, C-terminal 4.7e-27

    See the detailed result >

    AT3G01540.4

    Model type
    Protein coding
    Short Description
    DEAD box RNA helicase 1
    Curator Summary
    RNA HELICASE DRH1
    Computational Description
    DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR