K22245

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22245

Determination of introduced cDNA(s)

J023027F21 - Rice Full-length cDNAs - Original: J023027F21

full reading [+] show sequence

GTTACAGCCT ACCTAGGGCA ACGCCGCCAC CGACACAGTC ACATTCACCT 
GCGTGTTCCG GACTCTGCGC TCCCCTTGGA TATGGACGCG ACCGATCCGC 
CGCCGCCGCC GCCGCCGCTC ACCAGGAAGA GGGGAAGGGA GGCGAGGAAG 
AGCAAGGAAG CAGCGCCACC ACGCGAGCCG AGAAGGGCTC GCAGTCGCAG 
CCATGTTCCA CCGCCGCCTG GAGCCGGAGA CGGACGGGGA GGAGACGGCG 
AGGAGGACGT CGGCTTCGAT CTCATCAGCC GCCTCCCCGA CGCCGTCCTC 
GGCGACATCA TCTCGCGCCT TCCCACCAAG GACGGCGGGA AGACCAGAGC 
CCTGTCCAAA CGGTGGCGCC CCGTCTGGCG CACCGCGCCG CTCAACCTCG 
ACGCCGGTGA TCTCGCCCCC GACGCCAACG GGGCGGCGCT GGCCGTCCTC 
GTCACCCAGA TACTCCTCGT TCACGCGGGG CCCGTACGCC GCTTCTGCAT 
CCCCGCGCAG CAGATCCACG AGCGCCCCGC CATGGTCGAA GGCTGGCTCG 
GGTCGCGGAG ATTCAAAAAC CTGGAGGAGC TCGAGTTCAC CGTCCCGGAA 
GACCCCTTCT ACGGGAGATC ATTCTTGCTG CTCCCGCCCC CGCCGTCCAC 
CTTCCGCTTC TCGGCCACCC TCCGTGTCGC CGCCATTAGC CAATGCAGCC 
TCCCAGACTG CACAGCCACC CTCGCGCTTC GGTTCCCGCA GCTCAGGCTG 
CTCTCCCTCC AGGAAGTCAT CGTCTCCGAG CATTCTCTCC ATAGCATCAT 
CGCCGGCTGC CCTGCACTGG AGGGGTTGCT GCTCAAACGT TCCTTCGGAT 
TCCGATGCCT CCGCATCAAT TCCCCTACCA TTAGAAGCGT CGCCTTCCAT 
TCCCCATGCT GTGGAGATCA CTGTGTATGG AAGGTGGGTT TCCACTTGGA 
AGAGGTGGTC ATCGAGGATG CTCCATGTCT TGAAAGGTTG ATCCATATTG 
AACGTGCAAT GGGATTGGGC GTTAATGTAA CCGTGATCGC GGCGCCCAAA 
CTGGAGGCCT GCGTCCTAGA CGACCTTGAT GACGGCTATT ACCGACTCGA 
TTTCGGCAAG GTGGTTTTTA AGGGATTTGC GGTTATTAAC TACACAACAC 
CAGTGTCGAG CATCAAGATT TTAGCCCTCA TCAGGGATAA TCTCAGGTTG 
GACAGGGTTA TCGAGTTAAT GAGATGCTTT CAGTGCTTGG AGAAATTGTA 
CATCACGGTG AAATATTTTT TCTGTTGATG CATCCCATTA TGGGGCAACT 
TATTGCTGGC GCCGCAAACA TTGGAGAAAA CTCAAAAGCC TTGACATATG 
TCTGAAGACA TTAGTGCTGG ATAATTATCG TGGCTTGAAA TCACAAATTA 
ACTTTGCCAC ATTCTTCATA AGGAATGCGA CTAAGCTTGA GAATATGATA 
TTTACAGGTG GTCGTAGCAA TGGTAACGCA TATTTTATTG CACGACAGCA 
AAAGCTGCTG GAGTTTGAGA AAAGGGCTTC AAAAACTGCT CACTTTCATT 
TTACAACCAA GAAATGCTAT TATGATTGGG TGCATATCAA GGATGTCCAT 
GATTTGTCTA TTGCTGATCC TTTTGAATGT ACCTGTTGAG ACTGATGAGT 
AGAATTATTG TAAGATGGTT CAACTGGGAA AGAGGACTTT GGAGAGTTGC 
TCGTTTTGAA TTTAAGACTG ATGGATACTG TCACTGAGCT GAAAATCTAT 
ATTGATCATG TTGTAGATTT GCCTTAATTG CTGTACATAC CTTTGGATGT 
TGTTGAAACA AGGTTTGATG TATTGAGCTG TTGTTTCATT CAGATACCTT 
TGAATATTGT TGAAAAAGAT TGATGTATTG AGCAGTTGTT TCGCTCAGAT 
ACTACTTTTT TTATTTTTTT ACCAATTTCT GTTGTAATAA TACTTGTTAA 
AAAATTGTTG TCAATGGCAG TTTAGCTGTC ATGC

Gene models with high sequence identity

AT4G00160.1 [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
E-value: 3e-12; Score: 70.90

InterPro Scan Digest

Program	Description	E-value
HMMSmart	FBD-like	0.0001
HMMPfam	FBD	1.8e-07
superfamily	F-box domain, Skp2-like	6.5e-08
HMMPfam	F-box domain, cyclin-like	0.00016
Gene3D	no description	0.00011

See the detailed result >

AT4G00160.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR