K22038

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22038

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22038

Determination of introduced cDNA(s)

  • J013140G04 - Rice Full-length cDNAs - Original: J013140G04

    full reading [+] show sequence

    Nucleotide sequence: J013140G04 - full reading 
    GTCCTTGCAC CTCTGCTCCG ACTTCCGAGC AAAGCCAAGT TGCTCACCGA 
    CTCACCCGTA GAGCTAGCTA GCCATGGCTG TTGCCGCAAG AGCCGCCGCC 
    GTGGCGTGCC TCCTGGTCGT AGGCCTCGCG GCCGTGGCGG GGGTCGACGG 
    CGCCACGGCG AGCTCCCCGG CCCCGGCGCC GGCCGTGGAC TGCACGGCGG 
    AGGCGCTGAA GTTGGCGGAC TGCCTGGACT ACGTGACCCC GGGGAAGACG 
    GCGCCGAGCC GGCCGTCGAA GCTGTGCTGC GGGGAGGTGA AGGGCGCGCT 
    CAAGGACAGC GCCGCCGTGG GCTGCCTGTG CGCCGCCTTC ACCTCCAAGA 
    CGCTGCCCCT CCCGATCAAC ATCACCCGCG CCTTGCACCT CCCCGCCGCC 
    TGCGGCGCCG ACGCCTCCGC CTTCAGCAAG TGCCTCGCAC CGGCGCCGTC 
    GCCGTCCGTG GCCCCGGGGA CATCGTCCGG CAGCGGCGGT GCGGCAGCGG 
    CACCGGCGAA GGGCGCCGCC GCAGCGAGGT CTCCGATGGC ATCGACCACC 
    GCCGTGCTCG TCGTCGCCGC CGCCGTGGCA GCTCCTCTGC TCGCCTTCTT 
    TCACTTCTGA TCGAGGAGTC CTTTCGTAGC CTCATTACAT TCTACAGTTT 
    GTCGTTGTGA TCGTGATTAG ACTCGGTGAC TTTTTGTTGT GACAATTTGA 
    GTTTACTGCA TGCATGCACC CTGCCGTGAT TAATTTAGCT CTCCAGAGTG 
    AGCATTCATA TTTAAAATAG TTTCCGTGAG TTATTTTTAA TTTGTATCGT 
    TATATGTGCA TCATATTATT AAGAGCGGTT AAATTTGACA AATTGGCTAC 
    AAAGTATTTT ATATC

    Gene models with high sequence identity

    1. AT5G64080.2 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 2e-10; Score: 63.20

     

    InterPro Scan Digest

    See the detailed result >

    AT5G64080.2

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G13820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR