K21951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21951

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21951

Determination of introduced cDNA(s)

  • J023139J24 - Rice Full-length cDNAs - Original: J023139J24

    full reading [+] show sequence

    Nucleotide sequence: J023139J24 - full reading 
    TTGAAGTTCG AGGAGAGAAA ACCAAACCCT AGCTAGGCTA AGGCGGAGTG 
    GAGAACCCCC GCCGTTGCCG GCGGCGGAGG CAGCGGCGGC GGCGCGCGGA 
    GAACACTCCG TCGCGGTCGA TTCCGTATCA ACAATGTCAG ATCCTGGAAG 
    GGATAGCAAC ATGCAGCAGC TCATCCCGAT AGCACCTCCA CCAAAGGCTT 
    CTTCTGGTAC CACTGGCAAG GAGCTCGTGG TCGTGGATGG TACGGGAAAG 
    GCTTCAGGAG GAGTCAAGCT ACGGGAAGAC GAGGAGGACC TGGAGGTGAA 
    GCTCAGGCGC ATCATGGAGA ACGTCCCTGT CCGTGTCAGC AACACCTCCG 
    GATCCTCTGC TGGTTCTGGC TCTGGTGATT TCCACCAGTA TCGGCAAATG 
    AGGAGGAGAG AACAGGACCG TCTTGCAAGG ATGGATGCTG ATTACCAGAA 
    GAGGAAACAG ATGGCTGAGT TTGAATTGAG GAGGGAGGAA AGGCTAAAAG 
    AAGCAGAGGA GCGGACAGCA AAGAAGCGCC TGAAACGCCA AAAGAAGAAG 
    CAGCGGAAGA AAGAGAAGAA ACGATCTAAA ACTAATAATG GTGGCGAGCA 
    ACCTAACGGA GGGGAGTCGT CTGGTGGTGA TGAGGATTCA GACGATGAAG 
    ATAAGCCATA GGCAAGTGGC ACACATCAAT CGGATTTGAA GTTGCTATTA 
    GACTACTGTT GAACCATTTC TTGGAGATTA CTTCTGAAGT AGAGCTTTGA 
    GCATGAACTA ATATTGGCAG GCTGCAGGCC CCCTTGTAGT TTTTTCTTGG 
    AAACACTCTT AAGATGAGAT GTGGCTTGTT TTCCTTGCTC TGATAAAGTG 
    ACTATGGAGT ATGGATGGAT AGATGAATCA TTTTCTGGTT ACCTTGTTTG 
    TTTCTTCTGA ATTATCATGT CTGGGGCTCC CTGTCCCTTA CAATAGCTTA 
    CTCGTGACAT TTAAATGAAT GAAATTTAAC TGTTTAGC

    Gene models with high sequence identity

    1. AT2G15270.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009...
      E-value: 8e-20; Score: 94.70

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther Protein of unknown function DUF1168 2.2e-32
    HMMPfam Protein of unknown function DUF1168 1.3e-34

    See the detailed result >

    AT2G15270.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR