K21937

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21937

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21937

Determination of introduced cDNA(s)

J013098N03 - Rice Full-length cDNAs - Original: J013098N03

full reading [+] show sequence

GATCGCGTTG CCCAAATAAT TACACGAATC GAACCAAACC CTAGCTTTTC 
CTCTTCGATT CCCGATCCCC CACCCAGCGA CTCGCCGGAA CCCTAGCCCT 
AGATCCCGCG CGGCTTGCCG CCGTGCTAGC CATGGCGTCC CTCAAGGAGC 
TCCTCCCGAC GCCCAAGGCG GCGGCGTCGA CGTTCTACGA CCACAGCAGC 
GACCCGTGGT TCAAGGAGCG GTATGGCGGG GAGTCGGCGC AATCCGACGC 
GGCGGCGGCG GCGGCGAAGC CTTCGGGCCC CGCCAAGCCC GTGCCGCCGT 
ACGGGAAGCG TGGCGGGTTC GTGCCGCGGC GGCCGGAGGA CTTCGGGGAC 
GGCGGCGCCT TCCCGGAGAT CCACGTCGCG CAGTACCCGC TCGGCATGGG 
CCGGCGCGAC GAGAAGGGCG GCTCGAAGAT CCTCGCGCTC ACCGTCGACG 
CCAAGGGCAG CGTCGCCTTC GACGCCGTCG TGAAGCAGGG TGAGAACGCC 
TCTAAGATCG TTTACTCAAA GCACAGCGAC CTCGTGCCCA AGATTGCCAC 
GGCTGATTCC GAGGCAACCG CGGACGACGA GGAGTACCAG AAACAGATCG 
AAGAAACCAC TGAACGAACT AAAGCTGCCT TGGAGAAGGT TGTCAATGTT 
CGGCTCTCCG CCGCACAGCC CAAGAATGTG CCGACGCATG ATTCAGAGTC 
AAAGTTTATC AAGTATAAGC CATCGCAGCA ATCGGCAGCC TTCAATTCAG 
GTGCCAAGGA GAGGATTATT AGGATGTCAG AGATGGCTCA GGATCCTCTT 
GAGCCACCGA AATTCAAGCA TAAGCGAGTG CCCCGCGCTT CTGGATCACC 
GCCTGTCCCA GTGATGCACT CGCCACCACG GCCAGTGACA GTGAAGGACC 
AGCAAGATTG GAAGATTCCA CCATGCATTT CAAATTGGAA AAATCCAAAG 
GGTTACACCA TACCACTCGA CAAGAGGTTG GCAGCTGATG GAAGGGGGCT 
GCAGGAGGTT CAAATTAATG ATAACTTTGC AAAGCTCTCT GAAGCACTGT 
ATGTGGCGGA GCAGAAGGCC AGGGAGGCAG TACAGATGCG ATCCAAGGTG 
CAGAGGGAGC TGCAGCTGAA GGAGAAGGAG AGGAAGGAGC AAGAGCTAAG 
GGCACTTGCA CAGAAGGCGC GCATGGAGAG GACTGGTGCC CCACCTGCAC 
CTACAGGGGT TCCTGCTGGT GGTGGTAGAG GTGCTGTTGG TGACAGGGAG 
GAAGATATGG ATTTGGAGCA GCCTCGTGAG CAACGAAGGG GGAGTAGAGA 
AGAAAGGGAA GCAAGGATTG AGCGTGACAG GATTCGTGAG GAGAGGAGAC 
GTGAGAGGGA GAGAGAGAGG AGGCTGGAGG CCAGGGATGC TGCAATGGGC 
AAGAAGAGTA AGCTCACTAG AGACAGGGAT CGTGATGTCA GTGAGAAGAT 
TGCCCTGGGC ATGGCAAGCA CTGGCGGTGC TAAAGGTGGG GAAGTCATGT 
ATGACCAGAG GTTGTTCAAC CAGGATAAAG GAATGGACTC TGGGTTTGCT 
ACAGATGATC AGTATAACAT CTACTCCAAG GGTCTCTTCA CAGCGCAGCC 
AACTCTATCC ACACTTTACA GGCCTAAGAA GGACGGTGAT TCTGATGTGT 
ATGGCGATGC AGATGAACAA CTGGAGAAGG TTATGAAGAC AGATAGGTTC 
AAACCAGACA AAGGATTTTC TGGTGCTTCA GAGAGGTCTG GAAAGAGAGA 
CAGACCTGTG GAGTTTGATA AACAGGAGGA GAATGATCCC TTCGGTCTTG 
ATCAGTTCTT GACTGAAGTG AAGAAGGGGA AGAAAGCTGT TGAGAAGATT 
GGAAGCGGAG GAGCCATGAG GGCAAGTGGT GGATCCTCAA TGAGAGATGA 
TTACGAGGGT GGAGGATCTG GGAGGTCCCG CATTAACTTT GAAAGAGGTC 
GTTGAGGTAT TAGATCTGCA TGTTTTGTTC AGAAGTTTCT CCATGCATTC 
CAAATGTTAT CTGGAGGGTA TTCTGTTGAG AATATCAACT TCTTGATGAG 
AGGACTTGAT GTCTGAGTTG TCTTAATGCA ACGTCTACTT CCAAGGGGCA 
TCTTAAGGAG TGTACCTGTT TAGATCCTGT GATTATGCTT GTTGTTTATC 
TATTTGTGGA TGGATCTGTA AGCTTAACTT ATCATCATTC CATATCCCTT 
ATATTTTGTG GTGCTTTATG AAGTCTCGAT GTGTCTGGCT GACCTTACAT 
TTTCTGGTAC TGTACCAAGT CTTTAAGATG TATCTGCCTA TCTGGCTGAA 
ATACTGAGAC ACGGGATACA TATAAATTCC GTGTTCTGTT TTTTCACAAG 
TTCT

Gene models with high sequence identity

AT1G77180.2 [+] show detail - chromatin protein family
E-value: 4e-180; Score: 629.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SKI-interacting protein, SKIP	2.5e-233
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	SKI-interacting protein SKIP, SNW domain	3.9e-66

See the detailed result >

AT1G77180.2

Model type: Protein coding
Short Description: chromatin protein family
Curator Summary: Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description: SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR