K21438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21438

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21438

Determination of introduced cDNA(s)

  • J023114G05 - Rice Full-length cDNAs - Original: J023114G05

    full reading [+] show sequence

    Nucleotide sequence: J023114G05 - full reading 
    GAAAGAAAAA CTAGTAAACA ACGCACACGA AAAGAAATCA AAGCAATGGC 
    TTCTCGATGG ATCCGTCCTG AGGTGTACCC GCTGTTCGCG ACCACCGGCG 
    TGGCCGTGGG GATCTGCGCG ATGCAGCTGG TGCGAAACAT CACCACCAAC 
    CCGGAAGTGA GGGTGACGAA GGAGAACAGG GCGGCTGGCG TGCTGGAGAA 
    CTTCGACGAG GGGAAGAGGT ACTCCCAGCA TGGCGTGAGG AGGTTCTGGC 
    TCTCCAAGCG CCGCGACTAC ATGCAGGCCC TGGACAACCC CACCAACCCC 
    TCAACCAAAA AAATAGACGC AAAAGTCATA CTTATTCGAT GGGTACATAT 
    ATATATATAT ATCGATTTGA TTCTCGGCTT CAAAATGCCT ATATATAAAT 
    GAATGAATCG ACAATAAGTT TTCAACATGG GGAATATCCA TGTTAGGACT 
    TGCTACTTTA CATATTTGTC CATATATCTG TCTGTTTCTC TAGGAATGAT 
    CATTTCCACT GTAATTCCTT TTATTTTCAA AAGGTAAAAA AAAAAAGAAA 
    TACACTGCTA GCTAACTAAT ATTGTTCTGT TCTGCTG

    Gene models with high sequence identity

    1. AT3G48140.1 [+] show detail - B12D protein
      E-value: 7e-25; Score: 110.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G48140.1

    Model type
    Protein coding
    Short Description
    B12D protein
    Computational Description
    B12D protein; CONTAINS InterPro DOMAIN/s: B12D (InterPro:IPR010530); BEST Arabidopsis thaliana protein match is: B12D protein (TAIR:AT3G29970.1); Has 143 Blast hits to 143 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR